Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 251 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 186 / 3e-58 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 45 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G05600 44 / 5e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 41 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014859 [exp] 406 / 1e-144 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 357 / 2e-125 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 346 / 6e-121 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 238 / 1e-78 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 209 / 5e-69 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 182 / 1e-56 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 180 / 1e-55 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 170 / 2e-51 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 166 / 7e-50 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145000 [exp] 354 / 3e-124 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 350 / 1e-122 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 251 / 1e-83 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 247 / 5e-82 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 202 / 2e-64 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 179 / 2e-55 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 48 / 3e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G048000 [exp] 44 / 5e-05 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 42 / 0.0002 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 42 / 0.0003 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10010398 pacid=23146076 polypeptide=Lus10010398 locus=Lus10010398.g ID=Lus10010398.BGIv1.0 annot-version=v1.0 ATGGCAGCAGTACGAGACGCTCACAACGTCAAGGTGCTGGGCTCCGGTGACCAGGTCATCGTCCTGGGTCACGGCTTCGGCACCGACCAGTCCGTCTGGA AACACCTCGTCCCTCACTTGCTCGACGATTTCAAGGTCATCGTTTACGACAACATGGGCGCCGGCACCACGAACCCTGATTTCTTCGACTTCGGACGCTA CTCCTGCCTAGAAGGATACGCCTCCGATCTCCTGGCTATTCTTGAGGATCTCGGGGTCGAGTCCTGCATCTTCGTCGGCCATTCTGTTTCCGCAATGATC GGCGTTATCGCCTCCATCAGCCGCCCGGAACTCTTCCTCAAACTCATCCTCCTTGCCGGCTCCCCTAGGTATTTGAACGATTCAGATTACTTTGGGGGAT TCGAGCAAGACGATCTAGACCAGTTATTCCAAGCGATGCAGTCCAATTACAAGTCGTGGTGCGGCGGATTTGCTCCTCTGATTGTGGGCGGAGACATGGA ATCAGTCGCAGTACAGGAATTCAGCAGGACGCTGTTCAATATGCGGCCAGATATAGCTCTGAGCATCGCCCAGATCATATTCCATAGCGACATGAGGAGC ATTCTACACATGGAGGAGCATTCTACACATGCTCACCATCCCCTGCCATATCCTGCAGAGCACCAAGGATCTAGCGGTGCCGGTGGTGGTTTCGGAGTAT CTGCACCAGCATCTGGGAGGGGAGTCCATCGTCGAGGTCATGCCGTCGGATGGCCACCTGCCGCAGCTCAGCTCGCCTGA
AA sequence Show only first row Show all	>Lus10010398 pacid=23146076 polypeptide=Lus10010398 locus=Lus10010398.g ID=Lus10010398.BGIv1.0 annot-version=v1.0 MAAVRDAHNVKVLGSGDQVIVLGHGFGTDQSVWKHLVPHLLDDFKVIVYDNMGAGTTNPDFFDFGRYSCLEGYASDLLAILEDLGVESCIFVGHSVSAMI GVIASISRPELFLKLILLAGSPRYLNDSDYFGGFEQDDLDQLFQAMQSNYKSWCGGFAPLIVGGDMESVAVQEFSRTLFNMRPDIALSIAQIIFHSDMRS ILHMEEHSTHAHHPLPYPAEHQGSSGAGGGFGVSAPASGRGVHRRGHAVGWPPAAAQLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10010398 [exp]	0	1
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10014859 [exp]	1.4	0.8377
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	2.4	0.8400
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	9.5	0.8074
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	13.6	0.8152
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	13.7	0.8165
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	19.0	0.8198
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009600 [exp]	20.1	0.7668
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	22.3	0.7196
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10027329 [exp]	25.3	0.8034
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	26.7	0.8063

Compare expression of checked genes

Lus10010398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.