Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67350 67 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019301 [exp] 93 / 2e-21 AT5G67350 55 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051800 [exp] 112 / 5e-28 AT5G67350 92 / 6e-21 unknown protein Potri.005G145100 [exp] 105 / 1e-25 AT5G67350 86 / 7e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010401 pacid=23146087 polypeptide=Lus10010401 locus=Lus10010401.g ID=Lus10010401.BGIv1.0 annot-version=v1.0 ATGAGAGGCGACGAGAAATGGGTTGGGTGCTCCGAACCCGAAAACCAGGGAGATGCAGACGAGGAGGAATCACTCTCGCTCTGCGATTTGCCAATTCATC TGATCAGTGAACAAGAAGAAGAAAAGCCGCTGTTATCCAATGGGTCGAGCTCCAACTCCGAAGACTTCGATTTCGGGCAATCACTAAGCGGGTCAAAATG CACCAATTCCGAGATGTGTGCTGCCGATGATATATTCTTCGCGGGGCAGATTCTTCCATTCCGTCATTCGGTCAGCTCGGAAAACAACGGCAACAGTTTC ACCCATTGCAAGTCTGTCGGACAACGCCTGGATAACAGCTCCAGCACGACGACCCGATCAATTTCTTGGGCCGGGTCTGTGGACCGGAGCTCTTCCATCG GTGGGTTCGTCAGTTTCAGCAGCAGAAGTAGTAGCATAAACAGTCTATACTCATCCTCATCTTCCTCCGCCGGCGGCAGCCAGCCTAGGTTTCTAAACCG ATTCCATACGTTCCCAAGCCCCAAACCCCAGATACTCAAAACCCCCAACGGCCAGATTCCGGGGAGCACAACGGTGAATAACAGAGCAAAGAAATCGTCA ATTTGGGAAAGTCTTAGACTAGGTTTAGTCCGTGCGCCAGAAATCGAGTTCCAGGATCTTAAATCAAGAAGCAGCGTTAGCCGGAACAATAGCAGTGGTA GTAGCTGTAAAACAGAGAAACAGGGGAGAAGCAAAACAGTGCCGCCGGAGACTGGGACGAAAAGCAAGAGAAGTAAGGGAAGGTTGTTAAGCGGGTGCGA CTGTAGAGTTGAAGCGGTGGCATTGAACAAGGAAAGCACAGTGGTGATGAACAGAAAGAGTACGAAAAAGCATTCAGAGGAATGGAAGAGAGTGATGATG GGGAGGAAGGAGAAAAAGGAGAAGCGTGATAAAGGAAAGGAAGAGAGGTCACGTCAGAGTCACAGGACGGTTGAGTGGATAAATGAGCTTTCATCACGCA GTACTCATGGTTAA
AA sequence Show only first row Show all	>Lus10010401 pacid=23146087 polypeptide=Lus10010401 locus=Lus10010401.g ID=Lus10010401.BGIv1.0 annot-version=v1.0 MRGDEKWVGCSEPENQGDADEEESLSLCDLPIHLISEQEEEKPLLSNGSSSNSEDFDFGQSLSGSKCTNSEMCAADDIFFAGQILPFRHSVSSENNGNSF THCKSVGQRLDNSSSTTTRSISWAGSVDRSSSIGGFVSFSSRSSSINSLYSSSSSSAGGSQPRFLNRFHTFPSPKPQILKTPNGQIPGSTTVNNRAKKSS IWESLRLGLVRAPEIEFQDLKSRSSVSRNNSSGSSCKTEKQGRSKTVPPETGTKSKRSKGRLLSGCDCRVEAVALNKESTVVMNRKSTKKHSEEWKRVMM GRKEKKEKRDKGKEERSRQSHRTVEWINELSSRSTHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67350			unknown protein		Lus10010401 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	1.0	0.9305
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	2.0	0.9105
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	5.0	0.8913
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	5.5	0.8885
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	6.2	0.8942
					Lus10036593 [exp]	6.5	0.8884
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	7.1	0.8855
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	7.3	0.8876
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	9.4	0.8883
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	9.6	0.8935

Compare expression of checked genes

Lus10010401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.