Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 446 / 8e-159 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 427 / 2e-151 ATPRR2 pinoresinol reductase 2 (.1) AT1G75280 256 / 3e-84 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 256 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G39230 239 / 1e-77 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 234 / 2e-75 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 229 / 2e-73 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 196 / 6e-61 NmrA-like negative transcriptional regulator family protein (.1) AT4G35250 53 / 9e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 42 / 0.0004 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012143 [exp] 629 / 0 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10012145 [exp] 566 / 0 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10007599 [exp] 424 / 1e-145 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012147 [exp] 398 / 1e-139 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10040442 [exp] 265 / 9e-88 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 260 / 7e-86 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 259 / 3e-85 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 260 / 6e-84 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 248 / 6e-81 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100200 [exp] 494 / 3e-178 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 494 / 8e-178 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 428 / 5e-152 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.005G228700 [exp] 272 / 2e-90 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 267 / 1e-88 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 262 / 2e-86 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 249 / 1e-81 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 241 / 5e-78 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 230 / 4e-74 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103701 [exp] 218 / 3e-69 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10010403 pacid=23154083 polypeptide=Lus10010403 locus=Lus10010403.g ID=Lus10010403.BGIv1.0 annot-version=v1.0 ATGAGGCAGTGCAGAGTGCTGGTGGTGGGAGGTACCGGGTACGTAGGCAAGCGGATCGTGAAGGCTAGCCTCGAACATGGCCACAACACTTACGTGCTCA AGCGACCTGAGACTGGGCTCGACATCGAGAAGCTCCAGCTCTTGTTGTCCTTCAAGAAACAGGGCGCCCACCTAGTGGAGGCATCCTTCTCTGACCATGA AAGCCTCGTCCGAGCGGTGAAGCTAGTTGATGTCGTGATATGTACCATGTCCGGGGTTCATTTCCGGTCGCATAACATCCTCCTCCAGCTGAAGCTCGTC GAGGCTATCAAGGAGGCCGGAAATGTTCAGAGATTCATTCCGTCGGAGTTTGGGATGGACCCGGCGAGGATGGGGGATGCGTTGGAGCCGGGGAGGGAGA CATTCGATCAGAAGATGGTGGTGAGGAAAGCGATCGAGGAAGCTAATATCCCCCATACGTACATCTCGGCCAACTGCTTTGGCGGTTACTTCATCGGCAA TCTTTCGCAGCTCGGAACCCTAAGCCCTCCTCCCGACAAGGTCATCATCTATGGAGATGGCAACGTCAAAGTGGTGTACGTAGACGAAGACGATGTTGCC ACATACACGATCAAGGCGATTGAGGATGACCGGACACTGAACAAGACGGTGTACCTCCGACCACCAGAGAATGTGATGACTCAGAGACAATTGGTGGCTA CTTGGGAGAAGCTCTCTGGCAACCAACTTCAAAAGATTGAGCTTCCTTCAAAAGACTTTCTTGCACTTATGAAAGGGAGGGACGTGGCGGAGCAGGCCGG GATAGGACACTTCTACCACATCTTCTACGAAGGATGCCTCACCAATTTCGACATCGACGCCGGCCAAGACCAAGTGGAAGCTTCGAGTTTATATCCTGAA GTTGATTACACTCGTATCGAAGATTACTTGAAGATCTACGTTTGA
AA sequence Show only first row Show all	>Lus10010403 pacid=23154083 polypeptide=Lus10010403 locus=Lus10010403.g ID=Lus10010403.BGIv1.0 annot-version=v1.0 MRQCRVLVVGGTGYVGKRIVKASLEHGHNTYVLKRPETGLDIEKLQLLLSFKKQGAHLVEASFSDHESLVRAVKLVDVVICTMSGVHFRSHNILLQLKLV EAIKEAGNVQRFIPSEFGMDPARMGDALEPGRETFDQKMVVRKAIEEANIPHTYISANCFGGYFIGNLSQLGTLSPPPDKVIIYGDGNVKVVYVDEDDVA TYTIKAIEDDRTLNKTVYLRPPENVMTQRQLVATWEKLSGNQLQKIELPSKDFLALMKGRDVAEQAGIGHFYHIFYEGCLTNFDIDAGQDQVEASSLYPE VDYTRIEDYLKIYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	0	1
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	1.0	0.9598
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	5.6	0.9133
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	7.1	0.9421
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	7.6	0.9499
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	8.1	0.8938
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10026143 [exp]	11.3	0.9273
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	14.7	0.9404
AT5G48790			Domain of unknown function (DU...		Lus10007599 [exp]	15.9	0.8749
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	17.1	0.8830
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10005682 [exp]	17.9	0.9061

Compare expression of checked genes

Lus10010403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.