Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59900 962 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 345 / 6e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 300 / 2e-89 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 304 / 7e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 290 / 1e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 284 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 285 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 284 / 3e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 276 / 2e-81 RPF2 rna processing factor 2 (.1) AT5G14770 281 / 4e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010410 [exp] 1768 / 0 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 1724 / 0 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 338 / 2e-102 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 337 / 5e-102 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 316 / 2e-93 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 316 / 2e-93 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 308 / 6e-90 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10013841 [exp] 303 / 7e-89 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 297 / 2e-86 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 1150 / 0 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 337 / 1e-100 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 333 / 2e-98 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 332 / 3e-98 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.003G105700 [exp] 325 / 1e-97 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 314 / 1e-94 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 317 / 6e-94 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 308 / 3e-91 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 294 / 9e-88 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 287 / 4e-85 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010407 pacid=23154149 polypeptide=Lus10010407 locus=Lus10010407.g ID=Lus10010407.BGIv1.0 annot-version=v1.0 ATGAACCTATGCCGCCTCCGGCAAATACCCATATCGAATCATCATCCCATTTCAATGATCTCACCTTCCAACTTCTTCTGCATAACTGCCGCCAACCTTC CCGATAGAGATGATGCTGAATTCGTCGCCGTCCTCGAGACGATCGTCCGAGGGAAGAATCAGAGCTGGAGAGAAGCTTTCAGCAACCCCTCGATCTCCGC AACGCTGACACCCTGCCACGTGGAGCAGGTGCTAATCCGGACTCTAGACGATTCCAGGTTAGCATTGAAGTTCTTCAACTTCCTAGGCCTTCACGGGAGC TTCGACCATACGGTGCTGTCTTTCTGCATTCTGATTCACTCTTTGGTGAATTCCGGCCATCATTGGCCGGCTTCTTCTCTGCTTCAAACGTTGTTGATAC GTGGGTTGGAGCCAAGGCAGGTTTTTGAGGCGTTGCTGGAGTCTTCTCAGATGTGTAGAGTTAAGCCTGGGTTGGGGTTGGGGTCAGGGTTAGGGTTTGA TCTGTTGATTCAGAGCTATGTGGGGAATAAAAGAGTTTTTGATGGTGGGTTGGTTTTCAGGTGGATGAAAGGTTGTGGCTTTTGGCCTGAGGTTAGGACT TTAGGGCTGCTTGTTAATGGTTACTTGAAGGCTAGGCGGTTTGACACGGTTTTGAGTTTGTATGATGAGATTGTGAATGCAGGGGTAATGCCTGATGTTT ACATCGGGATAGCAGTGGTTAGGAGCTGGTGTGAGTTGAAGGAGTTTGACAGAGCGAAGGAAATGATTCGGTGGATGGAAGAGAATAGGTCCGAGTCGAG TTTAGTGTGTTACAATGTGCTTATTCACGGGCTCTGCAAGTCCCAGAGAGTTTGGGAAGCTGTTGAGATCAAGGATGGTTTGATTCGTAAGGGTGTTCGA GCTGATGTGGTTACGTATTGTACTTTGGTGCTTGGGTTGTGTAGAGTGCAGGGGTTTGAGGTTGGTATGGAGATGATGAATGAGATGATTGAGTTAGGGT TTGTTCCTAGTGAAGCTTCCGTTTCGAGCCTAGTTGAGGGTTTAAGGAAGGCAGGGAGGGTCGAGAATGCGTATGATTTGGTGGTTAAGGTTGGGCGAGT TGGGGTAGTTCCTAATTTGTTCGTGTACAATGCATTGATGAATTCGTTGTGTAAAAATGGAAGATTTGACAAAGCCAAGTCTCTTTTCGAAACGATGAAG GGGTCGGGTTTATGTCCGAATGATATAACTTATTCTATTTTGGTTGATTCATGTTGTAGAAGGGGACAACTAGATTCTGCAATTCAGTTTCTTCACAGAA TGATTGAGGCAAGCGTAAAACTAACCGTGTATCCATATAATTCGTTGATCCACAGTCACTGCAAAATAGGGAATTTGAATGCCGCATGGTCTTTCTTCCA TGAAATGATCGATAAAGGATTGACACCGACTGTTGTAACCTACACTTCGTTGATAAACGGGCTGTGCAACAATGGAGATGTGCACAAGGCATTTCAGCTT TATCATGAGATGACCGGCAAGGGCATTGCTCCTAATATCTACACATTACTTCACTTATACACGGAAGCCATCCGTTTGTTCAATGATATGGTAAAGTGGG ATGTTACACCGAACGAGGTTACTTACAACGTCCTGATTGAAAAACACTGCAAGGATGGGAACACATCCGGAGCATTCTCTTTGTTCAACGAAATGCAAGA TAAGGGTCTAGTTCCAGATACATATACTTACCGGCCTCTAATTAGTGGCCTTTGTTCTACCGGTAGAGTGTCGGAGGCCAAGGAGTTTGTGGACAGACTT CATTTTCAGCATTGTAGGTTAAACGAGCTATGCTACAGTGCACTGCTGCAAGGGTTTTGTGAGGAAGGAAGGCTCGGTGATGCACTAATTGCTGCTCGTG AAATGTTAGATAGAGGCATTGACATGGATCTCGTGTGTTACGGTGTTCTGGTTGATGGAACGATGAGGAAGCATGATACGAAAGCGTTGATGGAGCTTTT GAAGGACATGAGTGATCGGGGTTTGAGGCCTGACAATGTAATGTACACTAGCATGATTGATGGCCACTCGAAGATAGGGAATGTTAAAGAGGCATTAGGG ATTTGGAATTTAATGATTGATGAAGGTTGCATACCTAGTACAGTAACATACACCGCTCTTATAAACGGTCTGTGCAAGGCAGGATTGATGGAAAAGGCTG AGCTTCTCTGCAAGGAAATGCTCACTAAAGGTTCGCCTCCAAACCACGTTACATATAGCTGCTTTCTCGACCATCTAGCCAAGGAAGGGAACATGGAGAA AGCCATGCAGCTACACAATGTCATGATGAACGGGTTTCTAGCGAACACCATTTCGTGTAACATACTAATCAGGGGATTCTGTAGATTAGGTAACATGGAG GAGGCTATGAGACTCCTGGATCGAATGAGTGATAACGGTATTTCTCCCGACTGTGTTACGTACTCGACGATAATATATGAGTACTGCAGAAGGGGGAGTT TGCGGGAAGCTTTAGATTTATGGGGTAGTATGTTGAGTAAGGGCGTAAAGCCCGATACTTTAGCCTACAATTTTCTGATATATGGCTGCTGTATTGTCGG GGAAGTGGGAAAAGCGTTGGAATTGCGAGATGATATGTTGAAGAGGGGGGTGAAGCTGAAGTTTAGCACTCATTGTGCTCTGAATCATGCAGCGGCTTGT TTGTCTGGGTAA
AA sequence Show only first row Show all	>Lus10010407 pacid=23154149 polypeptide=Lus10010407 locus=Lus10010407.g ID=Lus10010407.BGIv1.0 annot-version=v1.0 MNLCRLRQIPISNHHPISMISPSNFFCITAANLPDRDDAEFVAVLETIVRGKNQSWREAFSNPSISATLTPCHVEQVLIRTLDDSRLALKFFNFLGLHGS FDHTVLSFCILIHSLVNSGHHWPASSLLQTLLIRGLEPRQVFEALLESSQMCRVKPGLGLGSGLGFDLLIQSYVGNKRVFDGGLVFRWMKGCGFWPEVRT LGLLVNGYLKARRFDTVLSLYDEIVNAGVMPDVYIGIAVVRSWCELKEFDRAKEMIRWMEENRSESSLVCYNVLIHGLCKSQRVWEAVEIKDGLIRKGVR ADVVTYCTLVLGLCRVQGFEVGMEMMNEMIELGFVPSEASVSSLVEGLRKAGRVENAYDLVVKVGRVGVVPNLFVYNALMNSLCKNGRFDKAKSLFETMK GSGLCPNDITYSILVDSCCRRGQLDSAIQFLHRMIEASVKLTVYPYNSLIHSHCKIGNLNAAWSFFHEMIDKGLTPTVVTYTSLINGLCNNGDVHKAFQL YHEMTGKGIAPNIYTLLHLYTEAIRLFNDMVKWDVTPNEVTYNVLIEKHCKDGNTSGAFSLFNEMQDKGLVPDTYTYRPLISGLCSTGRVSEAKEFVDRL HFQHCRLNELCYSALLQGFCEEGRLGDALIAAREMLDRGIDMDLVCYGVLVDGTMRKHDTKALMELLKDMSDRGLRPDNVMYTSMIDGHSKIGNVKEALG IWNLMIDEGCIPSTVTYTALINGLCKAGLMEKAELLCKEMLTKGSPPNHVTYSCFLDHLAKEGNMEKAMQLHNVMMNGFLANTISCNILIRGFCRLGNME EAMRLLDRMSDNGISPDCVTYSTIIYEYCRRGSLREALDLWGSMLSKGVKPDTLAYNFLIYGCCIVGEVGKALELRDDMLKRGVKLKFSTHCALNHAAAC LSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	7.5	0.6693
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	11.9	0.6779
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	16.9	0.6004
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	19.7	0.6740
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10015397 [exp]	23.1	0.5898
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10009686 [exp]	27.3	0.6554
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	32.2	0.6108
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	42.3	0.6324
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	61.3	0.5996
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	107.0	0.5666

Compare expression of checked genes

Lus10010407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.