Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10760 444 / 2e-153 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) AT4G09980 120 / 2e-30 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT1G19340 48 / 3e-06 Methyltransferase MT-A70 family protein (.1) AT1G37010 39 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010405 [exp] 577 / 0 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 568 / 0 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10014971 [exp] 137 / 2e-36 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10038853 [exp] 137 / 4e-36 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085200 [exp] 508 / 1e-177 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Potri.015G147200 [exp] 138 / 2e-36 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.012G144400 [exp] 137 / 2e-36 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05063 [flax] [poplar] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Lus10010408 pacid=23154136 polypeptide=Lus10010408 locus=Lus10010408.g ID=Lus10010408.BGIv1.0 annot-version=v1.0 ATGATGATGGGCAGTGGTACTCTTGCGCCTCCCAGGCCTTTAAAGCCCCAGCGTGCTGAATACTGTTCAGAAGTTGAACTCGGGGAGCCCCAGTGGATCA ACTGCGACATCCGGTCGTTTAAAATGGAGATTTTAGGTCAATTCGGAGTGATCATGGCTGATCCACCTTGGGATATCCATATGGAACTGCCCTATGGAAC GATGGCTGACGATGAAATGCGTAACCTTAATGTCCCTGTGCTGCAAACTGACGGCTTGATCTTCCTGTGGGTTACCGGACGTGCGATGGAGCTTGGACGT GAATGTTTAGATATGTGGGGTTACAAACGTGTCGAGGAGATTATATGGGTGAAGACTAACCAACTTCAGCGAATCATTCGGACGGGAAGGACAGGACATT GGCTCAATCATAGCAAGGAGCATTGTCTTGTCGGAATCAAGGGGAATCCAGATGTTAACAGGAATATCGATACCGATGTTATCGTTGCTGAGGTTCGAGA AACAAGTCGTAAGCCTGACGAGATGTATCCGTTGCTGGAGAGGATAAGTCCGAGGACGAGGAAGCTCGAATTGTTTGCTCGAATGCACAATACTCAAGCA GGGTGGATGTCGATGGGGAATCAGTTGGATGGTGTACGACTGGTGGACGAAGGGCTTCGTGCTCGATTCAAGGCCGCTTACCCCGATGTGGTTGTGCAGC CAGCCTCCCCTCCTCGACCATCTGCGATGGAGATTGACTCTGCGCCTTTTGGAGATAACACAAACGCAGCACCACAAACAGCGTATGCATCTGACGAGAA GCATATGACCTCTGGGAGTGCTATGGCTGCTGGCTGA
AA sequence Show only first row Show all	>Lus10010408 pacid=23154136 polypeptide=Lus10010408 locus=Lus10010408.g ID=Lus10010408.BGIv1.0 annot-version=v1.0 MMMGSGTLAPPRPLKPQRAEYCSEVELGEPQWINCDIRSFKMEILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPVLQTDGLIFLWVTGRAMELGR ECLDMWGYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPDVNRNIDTDVIVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTQA GWMSMGNQLDGVRLVDEGLRARFKAAYPDVVVQPASPPRPSAMEIDSAPFGDNTNAAPQTAYASDEKHMTSGSAMAAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10010408 [exp]	0	1
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10010405 [exp]	4.4	0.8780
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	18.8	0.8398
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	20.1	0.8697
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	26.7	0.8455
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	31.0	0.8699
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	32.9	0.8540
AT3G51010			unknown protein		Lus10042347 [exp]	34.4	0.8640
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	39.4	0.8394
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	44.8	0.8486
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	48.5	0.8644

Compare expression of checked genes

Lus10010408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.