Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45590 130 / 8e-39 Ribosomal protein L35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010406 [exp] 275 / 4e-96 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10012140 [exp] 241 / 2e-82 AT5G45590 148 / 7e-46 Ribosomal protein L35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099900 [exp] 152 / 2e-47 AT5G45590 134 / 2e-40 Ribosomal protein L35 (.1) Potri.001G133600 [exp] 144 / 2e-44 AT5G45590 105 / 3e-29 Ribosomal protein L35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01632 [flax] [poplar] Ribosomal_L35p Ribosomal protein L35
Representative CDS sequence Show only first row Show all	>Lus10010409 pacid=23154071 polypeptide=Lus10010409 locus=Lus10010409.g ID=Lus10010409.BGIv1.0 annot-version=v1.0 ATGCTGAGATTCTGTACAAAGCTCCGCTCTATAGCGGCACAATCGTCGGCGGCGGCTCAATCTCCGATCTTCCGGGCATCTTCCCGTCTCCTTATTAATC ATTCTTCCCCGCTAATCCCTTCCAAATTCCGATCTCTCCACTCCGGAGCTGCTTCCACTGCTTGGAGCCTTAGCGGGCAGCTTATCAATGCGCCCAAATT GCCGTCTGCATTGGCTTCCTCTCCATCGCCCTTCTCTTTGGTGAGTGTCCGCTGTGTTTCATCGAGGGAGCGGAAGAAGAGGAGGAAGCCGATGACCCCA GTTACCTCCAAAGTGAAGAAGATTAAAATGAAGGGTTACTCTTCATACAAGGGCAGGTTTCGGGCATTGAAAGATGGGACTATTCGTCGTTGGCATGAGG GTAAGAGACACAATGCGCACTTGAAGTCGAGTAAAGCAAAGCGCAGACTTCGACAGCCTGCTCTCGTCCATCCAGCATATGCCACGGTCATGAAGAAGCT CAACTTCTTCAACTAA
AA sequence Show only first row Show all	>Lus10010409 pacid=23154071 polypeptide=Lus10010409 locus=Lus10010409.g ID=Lus10010409.BGIv1.0 annot-version=v1.0 MLRFCTKLRSIAAQSSAAAQSPIFRASSRLLINHSSPLIPSKFRSLHSGAASTAWSLSGQLINAPKLPSALASSPSPFSLVSVRCVSSRERKKRRKPMTP VTSKVKKIKMKGYSSYKGRFRALKDGTIRRWHEGKRHNAHLKSSKAKRRLRQPALVHPAYATVMKKLNFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	0	1
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	5.9	0.9097
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	9.4	0.9198
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10003957 [exp]	10.2	0.8528
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Lus10017622 [exp]	12.4	0.8880
AT4G27660			unknown protein		Lus10032928 [exp]	15.3	0.9184
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	15.8	0.9173
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10021371 [exp]	18.3	0.8343
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	19.2	0.9012
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	19.8	0.9141
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	25.8	0.9070

Compare expression of checked genes

Lus10010409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.