Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59900 951 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 352 / 3e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 310 / 7e-93 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 308 / 3e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 306 / 5e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 286 / 3e-85 RPF2 rna processing factor 2 (.1) AT5G14770 290 / 4e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 289 / 4e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 286 / 2e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G31850 290 / 3e-83 PGR3 proton gradient regulation 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010407 [exp] 1716 / 0 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 1680 / 0 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 350 / 5e-107 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 347 / 1e-105 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 330 / 2e-98 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 318 / 8e-96 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 316 / 4e-95 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 316 / 6e-93 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 315 / 3e-92 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 1122 / 0 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 354 / 1e-106 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 343 / 2e-104 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G040200 [exp] 336 / 9e-101 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 330 / 2e-100 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 337 / 9e-100 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G368700 [exp] 330 / 2e-97 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 322 / 1e-96 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 311 / 2e-93 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 303 / 5e-91 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010410 pacid=23154132 polypeptide=Lus10010410 locus=Lus10010410.g ID=Lus10010410.BGIv1.0 annot-version=v1.0 ATGAACCTATGCCGCCTCCGGCAAATACCCATATCGAATCATCATCCCATTTCAATGATCTCACCTTCCAACTTCTTCTGCATAACTGCCGCCAACCTTC CCGATAGAGATGATGCTGAATTCGTCGCCGTCCTCGAGACGATCGTCCGAGGGAAGAATCAGAGCTGGAGAGAAGCTTTCAGCAACCCCTCGATCTCCGC AACGCTGACACCCTGCCACGTGGAGCAGGTGCTAATCCGGACTCTAGACGATTCCAGGTTAGCATTGAAGTTCTTCAACTTCCTAGGCCTTCACGGGAGC TTCGACCATACGGTGCTGTCTTTCTGCATTCTGATTCACTCTTTGGTGAATTCCGGCCATCATTGGCCGGCTTCTTCTCTGCTTCAAACGTTGTTGATAC GTGGGTTGGAGCCAAGGCAGGTTTTTGAGGCGTTGCTGGAGTCTTCTCAGATGTGTAGAGTTAAGCCTGGGTTGGGGTTGGGGTCAGGGTTAGGGTTTGA TCTGTTGATTCAGAGCTATGTGGGGAATAAAAGAGTTTTTGATGGTGGGTTGGTTTTCAGGTGGATGAAAGGTTGTGGCTTTTGGCCTGAGGTTAGGACT TTAGGGCTGCTTGTTAATGGTTACTTGAAGGCTAGGCGGTTTGACACGGTTTTGAGTTTGTATGATGAGATTGTGAATGCAGGGGTAATGCCTGATGTTT ACATCGGGATAGCAGTGGTTAGGAGCTGGTGTGAGTTGAAGGAGTTTGACAGAGCGAAGGAAATGATTCGGTGGATGGAAGAGAATAGGTCCGAGTCGAG TTTAGTGTGTTACAATGTGCTTATTCACGGGCTCTGCAAGTCCCAGAGAGTTTGGGAAGCTGTTGAGATCAAGGATGGTTTGATTCGTAAGGGTGTTCGA GCTGATGTGGTTACGTATTGTACTTTGGTGCTTGGGTTGTGTAGAGTGCAGGGGTTTGAGGTTGGTATGGAGATGATGAATGAGATGATTGAGTTAGGGT TTGTTCCTAGTGAAGCTTCCGTTTCGAGCCTAGTTGAGGGTTTAAGGAAGGCAGGGAGGGTCGAGAATGCGTATGATTTGGTGGTTAAGGTTGGGCGAGT TGGGGTAGTTCCTAATTTGTTCGTGTACAATGCATTGATGAATTCGTTGTGTAAAAATGGAAGATTTGACAAAGCCAAGTCTCTTTTCGAAACGATGAAG GGGTCGGGTTTATGTCCGAATGATATAACTTATTCTATTTTGGTTGATTCATGTTGTAGAAGGGGACAACTAGATTCTGCAATTCAGTTTCTTCACAGAA TGATTGAGGCAAGCGTAAAACTAACCGTGTATCCATATAATTCGTTGATCCACAGTCACTGCAAGATAGGGAATTTGAATGCCGCATGGTCTTTCTTCCA TGAAATGATCGATAAAGGATTGACACCGACTGTTGTAACCTACACTTCGTTGATAAACGGGCTGTGCAACAATGGAGATGTGCACAAGGCATTTCAGCTT TATCATGAGATGACCGGCAAGGGCATTGCTCCTAATATCTACACATTTACTTCACTTATACACGGTTTCTGTCAAGCTAATATGATACAGGAAGCCATCC GTTTGTTCAATGATATGGTAAAGTGGGATGTTACACCGAACGAGGTTACTTACAACGTCCTGATTGAAAAACACTGCAAGGATGGGAACACATCCGGAGC ATTCTCTTTGTTCAACGAAATGCAAGATAAGGGTCTAGTTCCAGATACATATACTTACCGGCCTCTAATTAGTGGCCTTTGTTCTACCGGTAGAGTGTCG GAGGCCAAGGAGTTTGTGGACAGACTTCATTTAGAGCATCGTAGGCTAAACGAGCTATGCTATAGTGCACTACTACAGGGCTATTGCGAGGAAGGAAGGC TCGGTGATGCACTAATTGCTGCTCGTGAAATGTTAGATAGAGGCATTGACATGGATCTCGTGTGTTACGGTGTTCTGGTTGATGGAACGATGAGGAAGCA TGATACGAAAGCGTTGATGGAGCTTTTGAAGGACATGAGTGATCGGGGTTTGAGGCCTGACAATGTAATGTACACTAGCATGATTGATGGCCACTCGAAG ATAGGGAATGTTAAAGAGGCATTAGGGATTTGGAATTTAATGATTGATGAAGGTTGCATACCTAGTACAGTAACATACACCGCTCTTATAAACGGTCTGT GCAAGGCAGGGTTGATGGATAAGGCTGAGCTTCTTTGCAATGAAATGCTCAACAAAGGTTCACCTCCAAACCACGTTACGTATAGCTGCTTTCTCGAGCA TCTAGCCAAGGAAGGGAACATGGAGAAAGCCGTGCAACTACACAATGTCATGATGAACGGGTTTCTAGCGAACACCATTTCGTGTAACATACTAATCAGG GGATTCTGTAGATTAGGTAACATGGAGGAGGCTATGAGACTCCTGGATCGAATGAGTGATAACGGTATTTCTCCCGACTGTGTTACGTACTCGACGATAA TATATGAGTACTGCAGAAGGGGGAGTTTGCGGGAAGCTTTAGATTTATGGAGGAGTATGTTAAGTAAGGGTGTGAAGCCCGATACTTTAGCATACAATTT TCTGATATATGGCTGCTGTATCGTCGGGGAAGTGGGGAAGGCGTTGGAATTGCGAGATGACATGTTGAGGAGGGGGATGAGGCTGAAGTTAAGCACTCAT TGTGCTCTGAATCATGCAGCTGCTTGTTCGACAGGGTAA
AA sequence Show only first row Show all	>Lus10010410 pacid=23154132 polypeptide=Lus10010410 locus=Lus10010410.g ID=Lus10010410.BGIv1.0 annot-version=v1.0 MNLCRLRQIPISNHHPISMISPSNFFCITAANLPDRDDAEFVAVLETIVRGKNQSWREAFSNPSISATLTPCHVEQVLIRTLDDSRLALKFFNFLGLHGS FDHTVLSFCILIHSLVNSGHHWPASSLLQTLLIRGLEPRQVFEALLESSQMCRVKPGLGLGSGLGFDLLIQSYVGNKRVFDGGLVFRWMKGCGFWPEVRT LGLLVNGYLKARRFDTVLSLYDEIVNAGVMPDVYIGIAVVRSWCELKEFDRAKEMIRWMEENRSESSLVCYNVLIHGLCKSQRVWEAVEIKDGLIRKGVR ADVVTYCTLVLGLCRVQGFEVGMEMMNEMIELGFVPSEASVSSLVEGLRKAGRVENAYDLVVKVGRVGVVPNLFVYNALMNSLCKNGRFDKAKSLFETMK GSGLCPNDITYSILVDSCCRRGQLDSAIQFLHRMIEASVKLTVYPYNSLIHSHCKIGNLNAAWSFFHEMIDKGLTPTVVTYTSLINGLCNNGDVHKAFQL YHEMTGKGIAPNIYTFTSLIHGFCQANMIQEAIRLFNDMVKWDVTPNEVTYNVLIEKHCKDGNTSGAFSLFNEMQDKGLVPDTYTYRPLISGLCSTGRVS EAKEFVDRLHLEHRRLNELCYSALLQGYCEEGRLGDALIAAREMLDRGIDMDLVCYGVLVDGTMRKHDTKALMELLKDMSDRGLRPDNVMYTSMIDGHSK IGNVKEALGIWNLMIDEGCIPSTVTYTALINGLCKAGLMDKAELLCNEMLNKGSPPNHVTYSCFLEHLAKEGNMEKAVQLHNVMMNGFLANTISCNILIR GFCRLGNMEEAMRLLDRMSDNGISPDCVTYSTIIYEYCRRGSLREALDLWRSMLSKGVKPDTLAYNFLIYGCCIVGEVGKALELRDDMLRRGMRLKLSTH CALNHAAACSTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	9.5	0.7327
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	14.3	0.7193
AT5G65630		GTE7	global transcription factor gr...		Lus10010525 [exp]	21.2	0.6610
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	21.3	0.6966
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	23.6	0.7150
AT3G01720			unknown protein		Lus10014878 [exp]	25.7	0.6392
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	26.0	0.6378
AT3G28430			unknown protein		Lus10018448 [exp]	26.5	0.6613
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	30.0	0.6093
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	32.2	0.6108

Compare expression of checked genes

Lus10010410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.