Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012138 [exp] 820 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133700 [exp] 400 / 2e-132 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010411 pacid=23154109 polypeptide=Lus10010411 locus=Lus10010411.g ID=Lus10010411.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGGAGCAGTCATGAGATCGAGAGCAATGGAGGGTCAATCTCGTTCACCAGCGCCGACGGGAACAGAGACCACCTGAGGACGGCGACGGCGG GGCAGGCGGCGGATGTTCATGATACAGCGTCGAAGCTTCAGAGGGCGATGGAGGAGTACGCCGGCGGCGACGGCTGCGACGTGATGGAGAAGCCGTCCAG CGTGGAAGTGTGGGTTTGGTACTTGTACGAGCTTTGTTCCTATTTTATCCATTCGGCTCTGCTTCCGATTGTGTTCCCGTTGATGATCAGCCAGATCCAT GGGCCTCCGCCCGAGCCTGACGGCGGGTGGACTGTTAGCCGGCGGAATGTCACTTGCCGCCCCGACGAATTGAAATTGTATGAAGCTTTAGTGTACAGGT CAATAGAGTTTGGGACCTCAAAGATCTCAGCCTTACAATGGACATCATTCTCATGGGGATTGGGCCTGGGCATAGCAGGCCCAATACTCTGGTTCATCTC CGCCAGCCTGGACCACGGAAGCTTGCAGACACTCATCGCCGGAACCGCCATCGCCACCGGATTCTTCTTCTGCCTCCCCACCGGCTTTTTCAACGTCACC TGGATCTTCCCTCCGTTCATCATTGCCATCGTCGCTGCCAGCACAATCGCCGCGGTCACCCACACCCGCCAGCACGCGCTGATGGTCCGAGGCTTCGCCG GCCCCAACCTCAACAAACCGAGATTCGCCCTTCGGCGTTGGATCTCCGGCTGGCTCTCCCTCTACGCCGCCGCCGCAGGCGGCCTCGGATCCGCCGTCAT GATCGCATTCACCTACTACATGCTCCGAAACTCCGAGAAGGTCCTCAGTCTCTGGATCGTCACCATCTTCAGCGGATTGAAATGGGCCACCGGGATATCA CACGTGTTCTTCATCAAGACCGGCACAATCGACGGCGGATCCTTTCCTCCGCCGTCGAACACAGCTCACGCTCTCTCGATTTTCACCTTCCCGCACGCGC TCGGAACTTTAATTTTGACTTTTCTCTCGTCTTTCACCACGATGTGCATCTTCGCCAGCGCGTTCCTCTACTTCGCCGGATACATCTGCCTCAATCCGCC GACGATTCTCTACTCTTGGCTAGTCTATTTCATCTTCCCGCTGATTTCTCTCCCGGCGATCCACTTAGTCCAGTATATAATCCGCGCCGATTCGGCGAAG ATGCACATGCTAGGGTTCATCTTATCACTGATGACTTCCGGGTTCGGGTTCTACTACCGGGCCGGGATCTGGCAGAAAGGGGTCGTCCTCGCCTTCGCGG CGGTCCAGGGAACGTCGGCGGGGCTGCTCCACGCCTTCCAGCGGCTATCGCTGATGACTTCCGGGTTCGGGTTCTACTACCGGGCCGGGATCTGGCAGAA AGGGGTCGTCCTCGCCTTCGCGGCGGTCCAGGGAACGTCGGCGGGGCTGCTCCACGCCTTCCAGCGGGTCTTACTGACGGACTGCTCCCCGCCGGGGAAG GAAGGCGTATTTGCGGCGTGGTTCGAGTGGTGCAGGACGGCAGGCACTTTCGCCGGGTTCACTGTGGCGGCGGCACTTCCGGGGGAGATCAGCACGAGCT TGGCCGTCACTTTCTTGACGTCAGTGGTCGGGATGGTGGTGCTGGTGTACGGACACATCAGCGACTCCGGCGGAGCCACGGCGGCGGGACATTTGTCGGC AAGCGGCGATGACTCGTCCGGTCGGGTCCGAGATGGTCGGTACCCTGATGCTGAGGTGTCGTTGACGCCGCCACGTCGGCTTGGTTTGGAGAATCCCGAT AATGGAGGGAATAGTTTGGCGCTAATGAAGGATCGTAATCCGAATTTTCAACATGAGGATGATATTAGCTTAGCTTAA
AA sequence Show only first row Show all	>Lus10010411 pacid=23154109 polypeptide=Lus10010411 locus=Lus10010411.g ID=Lus10010411.BGIv1.0 annot-version=v1.0 MAEGSSHEIESNGGSISFTSADGNRDHLRTATAGQAADVHDTASKLQRAMEEYAGGDGCDVMEKPSSVEVWVWYLYELCSYFIHSALLPIVFPLMISQIH GPPPEPDGGWTVSRRNVTCRPDELKLYEALVYRSIEFGTSKISALQWTSFSWGLGLGIAGPILWFISASLDHGSLQTLIAGTAIATGFFFCLPTGFFNVT WIFPPFIIAIVAASTIAAVTHTRQHALMVRGFAGPNLNKPRFALRRWISGWLSLYAAAAGGLGSAVMIAFTYYMLRNSEKVLSLWIVTIFSGLKWATGIS HVFFIKTGTIDGGSFPPPSNTAHALSIFTFPHALGTLILTFLSSFTTMCIFASAFLYFAGYICLNPPTILYSWLVYFIFPLISLPAIHLVQYIIRADSAK MHMLGFILSLMTSGFGFYYRAGIWQKGVVLAFAAVQGTSAGLLHAFQRLSLMTSGFGFYYRAGIWQKGVVLAFAAVQGTSAGLLHAFQRVLLTDCSPPGK EGVFAAWFEWCRTAGTFAGFTVAAALPGEISTSLAVTFLTSVVGMVVLVYGHISDSGGATAAGHLSASGDDSSGRVRDGRYPDAEVSLTPPRRLGLENPD NGGNSLALMKDRNPNFQHEDDISLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010411 [exp]	0	1
					Lus10038255 [exp]	19.3	0.6413
					Lus10012138 [exp]	24.6	0.6157
AT3G60750			Transketolase (.1.2)		Lus10007839 [exp]	26.3	0.5549
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	38.1	0.6256
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	41.8	0.5867
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10041630 [exp]	42.3	0.6016
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	45.6	0.5568
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	46.2	0.5980
					Lus10021106 [exp]	65.7	0.5650
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	76.7	0.5477

Compare expression of checked genes

Lus10010411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.