Plant FIBer expression Database

Lus10010412 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32080 662 / 0 AtLrgB membrane protein, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012137
[exp]
941 / 0 AT1G32080 709 / 0.0 membrane protein, putative (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G099600
[exp]
654 / 0 AT1G32080 663 / 0.0 membrane protein, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04172 LrgB LrgB-like family
Representative CDS sequence
>Lus10010412 pacid=23154084 polypeptide=Lus10010412 locus=Lus10010412.g ID=Lus10010412.BGIv1.0 annot-version=v1.0
ATGGCGACAAATCACCACCACCCTCTGTCCGTCACTTCTTCGCCCACGTATCACCAACGCCGCTCACCCCTCTTCATTACACGACCCTCATTCAAAACCC
CATCAACCAAAATCGCCGCCTTTTCTCACGTCACAGTCAAATCCTTTCACAGGCATTTCCGCAAACACCTGCTGCCCATCAACCCTAATCCCAGGTTCCT
GCAAATGACCACTCAGGAGGAGGAGGAGAATCCGTCAGTTCTCCGCACTCCTTTGATCCAGTCACTCGGGTCTGCTTCCGATGGCACTCCCGCTGCCTCG
CCTACTCTCACTAAGCACGTTGTTGGGGCTCTGCATTTGCTGGTTTCGCTTGGGATTGTGCTGGCAGTGGATAAGTATCTGAAGATGGCGTTTCTAGCAG
CTTCTATCAAGTTCCCAAGTGCACTGTTTGGGATGTTCTGTATATTCTCTGTGCTTGTGGTTCTTGACGTTATTGTGCCCGCTGCAGCAGCCGGTGTTGT
GAGCTTCTTCGAGCCTGCGCTTCTCTTCATCCAGAGATGGCTTCCACTGTTCTATGTCCCCTCTCTGGTTGTCTTGCCGCTCTCTGTTAGGGACATGCCT
GCTGCTTCTGGTGCCAAGATTTGCGTCATTGTAGCTGTTGGATGGCTGGCTTCACTCTGTGTAGCGGGATTCACCGCAATTGCTGTGAGGAAAATGGTTA
AGACAGAAATGACAGATGCTGAGCCTATGGCAAAGCCCTCTGCTTTTTCCTCAATCGAGCTGTGGGCTTGGACTGGAATCTTTGTAGCATCATTCGTGGG
TGCCTATTTCTATCCGTTGTTGCTGGAGACTAGTGCTCGGACTTGCCTTCCGTTCCTACTATCAGCCACCGCCCTGGGTTACATTGTCGGTACTGGGTTG
CCTTCTGGTTTGAAGAAAGTTTTCCATCCGATCATCTGCTGTGCTCTATCCGCAGACTTGGCAGCTTTCGCTTATGGCTACGTATCCAAAACTGGACTTG
ATGCTGTTTTAGGATCATATCTTACGAAGGCCGCTGCTAATCCTGGTGCTGGAGATGTGTTAATGGGATTTCTTGGATCTGTCATTCTTTCTTTTGCCTT
CTCAATGTTCAAGCAGAGGAAGCTCGTCAAGAGACACGCAGCAGAGATCTTCACCTCAGTCATCATCGCAACGTTTTTCTCCTTGTACTCGACGGCTTTT
GCTGGACGTCTACTCCAACTCGAACCGAGCTTGACCATTTCCATTCTTCCTAGATGTATCACTGTGGCATTGGCCCTCAGCATAGTTTCACTGTTTGATG
GTGCCAATTCATCGTTAACAGCAGCAGTGGTCGTAGTAACCGGTCTTATTGGAGCAAACTTCGTGCAAGCGACGCTCGATAAGTTGCAGTTCCGCGATCC
TATAGCTCGAGGAATCGCCACTGCTTCCAGTGCTCATGGACTGGGAACAGCAGCATTGTCAGCAAAGGAACCTGAGGCGCTTCCTTTCTGTGCAATTGCT
TACGCTCTTACTGGGATCTTTGGTTCGATAATTTGTTCGGTTCCGGTGGTTAGGCAAAGTTTGCTTGCCATAGTTGGCTGA
AA sequence
>Lus10010412 pacid=23154084 polypeptide=Lus10010412 locus=Lus10010412.g ID=Lus10010412.BGIv1.0 annot-version=v1.0
MATNHHHPLSVTSSPTYHQRRSPLFITRPSFKTPSTKIAAFSHVTVKSFHRHFRKHLLPINPNPRFLQMTTQEEEENPSVLRTPLIQSLGSASDGTPAAS
PTLTKHVVGALHLLVSLGIVLAVDKYLKMAFLAASIKFPSALFGMFCIFSVLVVLDVIVPAAAAGVVSFFEPALLFIQRWLPLFYVPSLVVLPLSVRDMP
AASGAKICVIVAVGWLASLCVAGFTAIAVRKMVKTEMTDAEPMAKPSAFSSIELWAWTGIFVASFVGAYFYPLLLETSARTCLPFLLSATALGYIVGTGL
PSGLKKVFHPIICCALSADLAAFAYGYVSKTGLDAVLGSYLTKAAANPGAGDVLMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIIATFFSLYSTAF
AGRLLQLEPSLTISILPRCITVALALSIVSLFDGANSSLTAAVVVVTGLIGANFVQATLDKLQFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIA
YALTGIFGSIICSVPVVRQSLLAIVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32080 AtLrgB membrane protein, putative (.1... Lus10010412
[exp]
0 1
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Lus10017195
[exp]
1.0 0.9767
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Lus10001525
[exp]
2.0 0.9738
AT3G18890 AtTic62 translocon at the inner envelo... Lus10026321
[exp]
2.4 0.9563
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Lus10031435
[exp]
2.8 0.9668
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Lus10021115
[exp]
3.5 0.9688
AT1G42550 PMI1 plastid movement impaired1 (.1... Lus10039886
[exp]
4.9 0.9444
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Lus10035545
[exp]
5.5 0.9569
AT5G38410 Ribulose bisphosphate carboxyl... Lus10017597
[exp]
7.5 0.9483
AT1G74730 Protein of unknown function (D... Lus10004269
[exp]
9.9 0.9403
AT3G14770 SWEET2, AtSWEET... Nodulin MtN3 family protein (.... Lus10005411
[exp]
10.2 0.9218

Lus10010412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.