Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010414 [exp] 179 / 1e-58 ND / Lus10012129 [exp] 97 / 3e-26 ND / Lus10012130 [exp] 94 / 4e-25 ND 39 / 4e-04 Lus10010418 [exp] 94 / 4e-25 ND / Lus10012128 [exp] 91 / 3e-24 ND / Lus10012134 [exp] 91 / 5e-24 AT5G40380 37 / 0.002 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010417 [exp] 91 / 7e-24 ND 37 / 0.002 Lus10010416 [exp] 90 / 2e-23 ND 36 / 0.004 Lus10012131 [exp] 89 / 3e-23 ND 36 / 0.005
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010415 pacid=23154120 polypeptide=Lus10010415 locus=Lus10010415.g ID=Lus10010415.BGIv1.0 annot-version=v1.0 ATGGCCGCCATATTTCCGACCATTGCAGCAGCAGCAGCAGCAGCAATGATGATGATGATGTCGTTGGTAAGCTGGTACGACGACGGATCCGGATTCTGTA CAGGAATCCAAAACAGAGCGAGGTGCAACCCAAGCCAGTTGCCGATGCCAAATTCGACGGTAGCTCAAAGAGCCATTCCCATGTCTTTCCGCCATCGTGC CATGGGTGGCTCCCCGGTTTGTGCCCGTTTGCATATAATGGAATTCGCCCTTGAGGGTGCTGTTGGTGCTGTTGGGTTGGATGTCTACTGCTACTTCACC TGCAATCTTGAATACTGCCAACCGTGTTACGACAAAGCCTTCAAATGGCTGATGCAGACGGACGGATCGGGCTGCCCCGGAAATGCCGGAGCGTATATCT CGCTTGATGATGGTTGCTGTTTGCGGTACGAGATTTACAACTTCTGTGGCGCTCTAAACTAA
AA sequence Show only first row Show all	>Lus10010415 pacid=23154120 polypeptide=Lus10010415 locus=Lus10010415.g ID=Lus10010415.BGIv1.0 annot-version=v1.0 MAAIFPTIAAAAAAAMMMMMSLVSWYDDGSGFCTGIQNRARCNPSQLPMPNSTVAQRAIPMSFRHRAMGGSPVCARLHIMEFALEGAVGAVGLDVYCYFT CNLEYCQPCYDKAFKWLMQTDGSGCPGNAGAYISLDDGCCLRYEIYNFCGALN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010415 [exp]	0	1
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	60.5	0.7600
AT3G14460			LRR and NB-ARC domains-contain...		Lus10032782 [exp]	125.0	0.7365
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	128.9	0.7149
AT4G13630			Protein of unknown function, D...		Lus10016673 [exp]	160.5	0.7125

Compare expression of checked genes

Lus10010415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.