Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010416 [exp] 220 / 4e-75 ND 36 / 0.004 Lus10012134 [exp] 189 / 9e-63 AT5G40380 37 / 0.002 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10012131 [exp] 174 / 5e-57 ND 36 / 0.005 Lus10010417 [exp] 169 / 7e-55 ND 37 / 0.002 Lus10012130 [exp] 167 / 3e-54 ND 39 / 4e-04 Lus10012132 [exp] 164 / 7e-53 ND 38 / 0.001 Lus10012129 [exp] 161 / 7e-52 ND / Lus10012128 [exp] 158 / 7e-51 ND / Lus10010415 [exp] 94 / 3e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141400 [exp] 39 / 0.0007 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10010418 pacid=23154068 polypeptide=Lus10010418 locus=Lus10010418.g ID=Lus10010418.BGIv1.0 annot-version=v1.0 ATGTCGCCTCTGCCGCCGACCCTAATGATTGTAGTGACATCAGCAATGATGATGTTGTCGGCAGTCAACTGTTACGACGACCATTCTGGATACTGTGCTG GACCTGAATACGTCTGCAGGCACAGCCAAAGCATGCTGCCGGAAGGGCGCACTGATCAACTTAACATAGACTTGACATTTCACGAATACGCCTTCAGCTC TCCAGCCGTTTGCCGCCGTTTAGAAAATCTGAATAAGGATATGAATTTCAATGTCTACGCTTACTTCTCCTGCAGCCTTGACCATTGCTTCAACTGCTAT GACGACGCCTTTGGGCACCTGCTGAACACGGACGTGTGCTCCGGCAAGGACGGCGGCTTCATCTCGTTGGATGGCTGCTGTTTAAGGTACGAGAAGTACG ACTTCTGCGGCGCTCCGAACTGA
AA sequence Show only first row Show all	>Lus10010418 pacid=23154068 polypeptide=Lus10010418 locus=Lus10010418.g ID=Lus10010418.BGIv1.0 annot-version=v1.0 MSPLPPTLMIVVTSAMMMLSAVNCYDDHSGYCAGPEYVCRHSQSMLPEGRTDQLNIDLTFHEYAFSSPAVCRRLENLNKDMNFNVYAYFSCSLDHCFNCY DDAFGHLLNTDVCSGKDGGFISLDGCCLRYEKYDFCGAPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010418 [exp]	0	1
AT5G52975			Protein of unknown function (D...		Lus10032886 [exp]	1.0	0.9554
AT5G16460			Putative adipose-regulatory pr...		Lus10020213 [exp]	5.5	0.7032
					Lus10008653 [exp]	5.7	0.6841
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	6.5	0.8216
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	7.3	0.8230
					Lus10011594 [exp]	9.0	0.8230
					Lus10008418 [exp]	9.8	0.7445
					Lus10002099 [exp]	10.4	0.8230
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	11.6	0.8230
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	12.7	0.8230

Compare expression of checked genes

Lus10010418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.