Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32220 361 / 5e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10730 152 / 1e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 150 / 6e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012126 [exp] 263 / 2e-88 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 224 / 2e-73 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 203 / 8e-65 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 161 / 9e-47 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 150 / 1e-42 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 52 / 2e-07 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136900 [exp] 394 / 1e-137 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 186 / 2e-56 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 184 / 8e-56 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 157 / 1e-45 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10010419 pacid=23154154 polypeptide=Lus10010419 locus=Lus10010419.g ID=Lus10010419.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGACGGGCGGCAACGGCAACTGGACAGCGGTGGGTGCGGCGGCGACGGCAACCAAACGGCAGCAGATGAGAATTGCATGGGTAGATTACG CATCAACACTTGACACCCGCCAGAAAAGGACACTAAACTCCCGAGAGGCACCAAAAATGGCGTCGTCGACGGCCTCGGCCTTCATCGCAGCTGTTTCTCC TACCTCTCTTCGCCGGACAAAGCACAGCAAGCTGTGCATCTCGTCGCTTCCGGTTGTTCCTTCTCGTCTCTCCTCGAACAGCTCTCGCCACCGGGTTCAA GTGAAGTGTAGCTACGCGGAGACGAGCGTAAGGGACGGCTCGGATTTGATCGATGTTGTCGCGAATGTGAAGTCCGAGAAGATTGTAGTGTTAGGAGGCA ATGGTTTCGTTGGTTCCGCGATATGCAAGGCTGCTGTAGAGAAGGGAATCGAAGTTGTCAGCCTTAGCAGGTCAGGACGCCCAAGTTTGTCTGCTCCATG GGCTGATCAGGTCACTTGGCTTCCAGGAGATGTTTTCTACACCAACTGGGATGAAGTGCTTCCAGGAGCCACTACATTAGTGACGACTCTAGGAGGATTT GGTAATGAAGAACAGATGCAAAGGATCAACGGGGAAGCCAACATCGTAGCAGTAAATGCTGCCAAAGTCTACGGTGTTCCCAAGTTCATCATGATATCAG TCCATGACTACAACCTCCCATCATTCCTTCTCCAATCTGGGTACTTCACCGGGAAAAGGAAAGCCGAATCGGAGGTCCTCTCCAAATATCCAAGCTCAAG CGTCATTCTGAGGCCGGGTTTCATCTATGGGAAGAGAAGAGTGAACGGGTTCGAGATACCACTGGACGCAGTAGGGCAGCCATTGGAGAAGATTCTTGAA GCTGTTAGCAACTTCACCAGACCCCTGAGTGCTCTTCCAGCGTCCGATTTGTTGCTCGCGCCTCCAGTTAGTGTCGATGATGTTGCGCTTGCCGTGATCA ATGCAGTTGGGGATGACGATGTTTTTGGGGTGCTCAGCATTGAACAGATCAAGGAAGCTGCTGCTAAAGTCAAGATATGA
AA sequence Show only first row Show all	>Lus10010419 pacid=23154154 polypeptide=Lus10010419 locus=Lus10010419.g ID=Lus10010419.BGIv1.0 annot-version=v1.0 MATATGGNGNWTAVGAAATATKRQQMRIAWVDYASTLDTRQKRTLNSREAPKMASSTASAFIAAVSPTSLRRTKHSKLCISSLPVVPSRLSSNSSRHRVQ VKCSYAETSVRDGSDLIDVVANVKSEKIVVLGGNGFVGSAICKAAVEKGIEVVSLSRSGRPSLSAPWADQVTWLPGDVFYTNWDEVLPGATTLVTTLGGF GNEEQMQRINGEANIVAVNAAKVYGVPKFIMISVHDYNLPSFLLQSGYFTGKRKAESEVLSKYPSSSVILRPGFIYGKRRVNGFEIPLDAVGQPLEKILE AVSNFTRPLSALPASDLLLAPPVSVDDVALAVINAVGDDDVFGVLSIEQIKEAAAKVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	0	1
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	5.5	0.9043
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	6.8	0.8965
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10000057 [exp]	6.9	0.8775
AT1G02550			Plant invertase/pectin methyle...		Lus10018615 [exp]	8.0	0.8306
AT3G12345			unknown protein		Lus10023468 [exp]	10.7	0.8927
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	14.8	0.8818
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	17.3	0.8744
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	18.7	0.8272
AT5G40500			unknown protein		Lus10002519 [exp]	20.9	0.8592
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	24.3	0.8831

Compare expression of checked genes

Lus10010419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.