Plant FIBer expression Database

Lus10010420 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012125
[exp]
541 / 0 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G137000
[exp]
214 / 1e-67 ND /
PFAM info
Representative CDS sequence
>Lus10010420 pacid=23154150 polypeptide=Lus10010420 locus=Lus10010420.g ID=Lus10010420.BGIv1.0 annot-version=v1.0
ATGGCGAGAGGAGAGGAACTGTGGGACGATTCCGCGCTCGTCGACGCTTTCAATGACGCCATGACCAAGTACAAGGTCAAGAAATATCACGGCAAGAATG
GTCAGGGAAGTTCAGCTGATAGAGAGGAAGTTCAAGCTGACAGTGAGGATACCGCTTCTGTTGTGGAGCAAGGCCATGTCGTTACGAGCGAGGTGCAGGA
AACCAGCAAGGATATATCACAACCTACAGCAGAGCTCTTGGGCGGAGAAAATATTGGACCACTGGATGAAAATCACTTTGCACAATCACTTGGCCATGAG
CAACCATTAGATTATACGACCGGCTTGAATGCTCAAGCTTTCACCACTCATTACAACGAACAAGATGCAGAAGCTTACAACCAGTTACTGAGCCAGTATT
ACGAGCTAGAAGAGAAAAGGAAAACCATTCTACAGCAGCTTCAGCAACTAGGTGATCATTACTACCAGCAACCTGCTGAAGGCTCTACCTCTCAAGACCA
ATCAGTCCTGGCTGACCAACCACCTCTCGCAACCTGCACTTGTTACTCTTGCCCTTATGCTAGTACTTGTCCGGCAGTTTCATGCTCGTCTCTTCCTGCT
TGTGCATGGGGTGCCTATGGTGGTAGCAAGTTGGGTACTGATTCTGCTACATTGACGTGTTGCGGAAAGTCTGGTTCTCTCGGAGAGAATGCCATCGTCA
AAACAGCAATGGAAGCTGCAGGTAGAGCAATTTCGTCCACGAAAGAGACAGCTTTCAACAATAACTCCGTAAAAGATGGAGACGATCAGGGACTAGCCCA
AGAACCCGGCTCCGAAACAGATCTTTGTGCAGTCTTAAACGCCTGGTATTCTGCTGGTTTTTACACTGCCAAGTATCTAACAGAGCAATCCATGGCTAAG
AAGTAA
AA sequence
>Lus10010420 pacid=23154150 polypeptide=Lus10010420 locus=Lus10010420.g ID=Lus10010420.BGIv1.0 annot-version=v1.0
MARGEELWDDSALVDAFNDAMTKYKVKKYHGKNGQGSSADREEVQADSEDTASVVEQGHVVTSEVQETSKDISQPTAELLGGENIGPLDENHFAQSLGHE
QPLDYTTGLNAQAFTTHYNEQDAEAYNQLLSQYYELEEKRKTILQQLQQLGDHYYQQPAEGSTSQDQSVLADQPPLATCTCYSCPYASTCPAVSCSSLPA
CAWGAYGGSKLGTDSATLTCCGKSGSLGENAIVKTAMEAAGRAISSTKETAFNNNSVKDGDDQGLAQEPGSETDLCAVLNAWYSAGFYTAKYLTEQSMAK
K

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010420
[exp]
0 1
AT3G16640 TCTP translationally controlled tum... Lus10033959
[exp]
7.6 0.7796
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Lus10013769
[exp]
17.3 0.7473
AT3G23490 CYN cyanase (.1) Lus10018091
[exp]
20.2 0.7451
AT4G17880 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) ... Lus10004575
[exp]
27.6 0.7429
AT4G07400 VFB3 VIER F-box proteine 3 (.1) Lus10024799
[exp]
27.7 0.7493
AT5G46160 Ribosomal protein L14p/L23e fa... Lus10023296
[exp]
37.9 0.7176
Lus10009043
[exp]
48.1 0.6869
AT1G62810 Copper amine oxidase family pr... Lus10032206
[exp]
57.3 0.6584
AT5G16790 AtTHO7 Tho complex subunit 7/Mft1p (.... Lus10030532
[exp]
59.7 0.7132
AT3G62580 Late embryogenesis abundant pr... Lus10010016
[exp]
70.7 0.7056

Lus10010420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.