Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 1021 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 646 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 491 / 1e-158 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 171 / 3e-46 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G37678 49 / 3e-06 PAT3, FRY1, FHY1 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1) AT5G02200 46 / 2e-05 FHL far-red-elongated hypocotyl1-like (.1.2) AT2G46380 44 / 0.0009 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012124 [exp] 1478 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10019655 [exp] 648 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 600 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 589 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 580 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10012123 [exp] 313 / 9e-100 AT2G37678 57 / 4e-10 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1) Lus10003115 [exp] 163 / 4e-43 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 161 / 2e-42 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10009897 [exp] 52 / 2e-06 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G135300 [exp] 1218 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 1204 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 904 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 900 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 659 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 647 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 558 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 555 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.006G219500 [exp] 170 / 7e-46 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 152 / 2e-39 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10010421 pacid=23154131 polypeptide=Lus10010421 locus=Lus10010421.g ID=Lus10010421.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGAGCTGGAAAGAATTAGTGAGAAAGATGCTTCCTCCAGGTGCATCTCTCCCGGAAGACGAATCCAAGCTTGATTACTCCATAGCTGTCG AGTATGTTGGTCCCCCAGTTGCTTACGAAGTTCCCAAAGTCGAGCCTCTCGATGTAAGTCCACACGGAATCCCCACTGCAGAGCCGCTTGAAATGTTGTC GAATGGATCAGCTCCTCCGAACGCATTAACTCCTGTTATCGATCCTATACCTTTGCCAGTTTCCTCTTACATTGCCGGCTTCGCCAACTCATCCTCGCCT GCTCAGAGTCCTCGACCATCCGCAAGCTCTGAATCGGTGGTATCGGTCTTGCAGAACCCCGATTCCTCTTCAGCGTCAGGCTCAGGTTCGCCCCGTTCGG TTAACAACCACCCCCCTCCTCCAACACGAGGAGGGAGGGTTCCCGTCGTTAAGTTCAACACTCGGGTTGATTCGTCGGTCAGCAAGAGTTCGGACATGGA TAGACCAGTTTATCCTGAGTATGTGGTTGGAGTTTCGAAAAAGAAGAAGAGTAGGGTTTGCTATAGGTGTGGAAGAGGGAAATGGGAAGTGAAAGAGTCG TGCTTGGTCTGCGATGCCAAGTACTGCAGCAACTGCGTGCTCAGGGCGATGGGATCGATGCCAGAAGGACGTAAGTGCGTGACTTGCATTGGCGAGCCGA TCGATGAGTCGAAAAGGTCTAAGCTAGGGAGGCATTCGCGTGTCTTGTCCAGATTGCTGAGTGCTCAGGAAGCTAAGCACATTATGAAATCGGAGAAAGA ATGTGCTGCTAATCAGCTTCGTCCCGAGCAGCTTATTATCAATGGCTTCCCTTTGAAGCCGGAGGAGATGTCTGAGTTGCTTGGATGTCCTTTGCCTCCG AAGAAATTGAAACCTGGTCGGTATTGGTACGACAAAGAATCCGGTTTATGGGGGAAGGAGGGAGAAAAACCAGATAGAGTCATTAGTTCCAACTTGAACT TCACAGGGAAGCTAAGTCCCGATGCAAGCAACGGTAACACTGAAGTTTACATGAACGGACGAGAAATTACGAAATGGGAGCGAAAAGTGCTAAGACTGGC GAAGGTGCAATGTCCACGCGATACGCATTTTTGGGTCTACGATGATGGTCGTTACGAGGAAGAAGGTCAGAACAATATAAGGGGTAACATCTGGGAAAAG GCATTGACGCGATTCATGTGCATGCTCTTGTCTTTACCTGTTCCCCATGGCCAACCTGTTGGGCAGAGAGATGAGCCTAGTACTTACACTACAGTTCCGA ATTATTTGGAGTCAAAAAGAGTCCAGAAGCTTCTTCTCCTCGGCCTTCCCGGGTCAGGAACCAGCACGATTTTCAAGCAGGCCAAGTTCTTGTACGGGAA CAGGTTCACCGAAGAAGAGCTGCAAGATATTAAGCTAATGATACAGAGCAATATGTACAGATACCTCAGCATCTTGCTCGATGGACGCGAACGCTTCGAG GAGGAGGCATTGTCGAAGATGGAAACCGGAGATCGCGACTCTGAAGCCGAAGAAGGCGGCGCGTCGAGCGAAACAAACCAGTGTGTCTATTCCATCAACC CAAAGTTGAAGAACTTCTCCGACTGGCTACTCGACATCATTGCGACCGGAGATTTAGACGCGTTCTTCCCTGCCGCAACACGTGAGTATGCTCCGTTGGT TGAAGAGCTGTGGAAAGATCCTGCAATCCAGGAGACGTATAAGAGGAAAGACGAGCTTCACTTCCTTTCAGATGTCTCGGAGTACTTCTTAAGCAGGGCT GTTGAGGTCTCAAGTAATGAGTACGAGCCAACCGAGCGAGACATCCTCTACGCGGAAGGGGTGACACAGGGAAATGGTTTGGCATGCATCGAGTTCTCGC TCGACGATCGGAGCCCAATGTCCGAGGTGTACACTGACAATCTCGAAGCTTCTTCGCCTCCTCTGACCAAGTACCAGCTGATAAGGGTGAACGCGAAGGG CATGAACGAAGGGTGCAAGTGGGTGGAAATGTTTGAAGACGTACGAGCCGTAGTGTTCTGCGTCTCGCTCAACGATTACGACCAGGTGTACCTAGCACCC GAGGGGGGTGGCGGCACCGTAACGGGTAGCGGATCCTTGCTTCAGAACAAAATGATGCACACCAAGGAGCTCTTCCAGTCGATGATCCGGCACCCTAGCT TCAAAGACACGCCGTTCGTGCTGGTATTCAACAAGTACGACCTCTTCGAAGAGAAGGCCAGCCGGGTGAACCTTAGCGCGTGCGAGTGGTTTTCGGACTT CAGCCCCGTGAGGCCGCACCACAACCAGCAGTCGATGGCCCACCAAGCGTACTATTACGTAGCAATGAAGTTCAAGGACCTGTACACCTCGCTGACCGGT CGCAAGCTGTTTGTGTGGCAAGCGAGGGCGAGGGACCGGGTGACTGTCGACGAGGGGTTCAAGTACATACGGGAGGTGCTCAAGTGGGACGAGGAGAAGG AAGACAACTACTTCGGTGGCCCTGAGGATTCTTGTTACAGTACTGATATGAGCTCTTCTCCATTTGTGAGGCAAGAGAAAAGGAAGTTAACAGCAGACCG ATTAAGTCTTCCTGCAGCCAAGCATGAATGTCTTCGCGTAATCAGCGAAAATGCGCAAGTGAAATCCGCTGAGGATAACAGGATGTTGTCCGATCACGAA TCTGGAAACGATTGCAACAGCGTCATTAATAATGTAGGTTCATCATCAGACTGTACCATGTCACTATCTGAACCTAAATTCGAGGCTTCAAAGATATGCC CGAGTAGTACTCTATCATTCAACTGGTCTTCAGAGAGTTGCAACAAGGATGATCCGCAATGCTCGTCAGACAATGATGCAACAGCATCATCAGCAAGAGA TTATGACAAGTTCCAAGAAACCGACGAAATGCTTGATTACGAGAACCGTTTTGGTTACACTTATACCGAATACAATGGTAGCGGCGGTGGTGGGGATGAA GACCTCGATAGCGATCTCTGTGCGAATTCTGGGAACCCTCGTGTCTATCTCCTTTCTTCATCTGGAGGATGGACTGTTAAGCAAGAGGCTCAATCAGGAA CAAGGGCGCCGACCATAGATCAAGAGTTCGAGCAGTATTTTTCTGGTCTTATGCTTCAGTAG
AA sequence Show only first row Show all	>Lus10010421 pacid=23154131 polypeptide=Lus10010421 locus=Lus10010421.g ID=Lus10010421.BGIv1.0 annot-version=v1.0 MEGESWKELVRKMLPPGASLPEDESKLDYSIAVEYVGPPVAYEVPKVEPLDVSPHGIPTAEPLEMLSNGSAPPNALTPVIDPIPLPVSSYIAGFANSSSP AQSPRPSASSESVVSVLQNPDSSSASGSGSPRSVNNHPPPPTRGGRVPVVKFNTRVDSSVSKSSDMDRPVYPEYVVGVSKKKKSRVCYRCGRGKWEVKES CLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGEPIDESKRSKLGRHSRVLSRLLSAQEAKHIMKSEKECAANQLRPEQLIINGFPLKPEEMSELLGCPLPP KKLKPGRYWYDKESGLWGKEGEKPDRVISSNLNFTGKLSPDASNGNTEVYMNGREITKWERKVLRLAKVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEK ALTRFMCMLLSLPVPHGQPVGQRDEPSTYTTVPNYLESKRVQKLLLLGLPGSGTSTIFKQAKFLYGNRFTEEELQDIKLMIQSNMYRYLSILLDGRERFE EEALSKMETGDRDSEAEEGGASSETNQCVYSINPKLKNFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKDELHFLSDVSEYFLSRA VEVSSNEYEPTERDILYAEGVTQGNGLACIEFSLDDRSPMSEVYTDNLEASSPPLTKYQLIRVNAKGMNEGCKWVEMFEDVRAVVFCVSLNDYDQVYLAP EGGGGTVTGSGSLLQNKMMHTKELFQSMIRHPSFKDTPFVLVFNKYDLFEEKASRVNLSACEWFSDFSPVRPHHNQQSMAHQAYYYVAMKFKDLYTSLTG RKLFVWQARARDRVTVDEGFKYIREVLKWDEEKEDNYFGGPEDSCYSTDMSSSPFVRQEKRKLTADRLSLPAAKHECLRVISENAQVKSAEDNRMLSDHE SGNDCNSVINNVGSSSDCTMSLSEPKFEASKICPSSTLSFNWSSESCNKDDPQCSSDNDATASSARDYDKFQETDEMLDYENRFGYTYTEYNGSGGGGDE DLDSDLCANSGNPRVYLLSSSGGWTVKQEAQSGTRAPTIDQEFEQYFSGLMLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10010421 [exp]	0	1
AT5G10500			Kinase interacting (KIP1-like)...		Lus10035944 [exp]	5.9	0.9046
					Lus10025734 [exp]	21.1	0.8978
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	33.2	0.8361
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	125.9	0.8704
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10029731 [exp]	131.8	0.8459
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	176.5	0.8537
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10015975 [exp]	182.3	0.8560
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10012938 [exp]	260.9	0.8406

Compare expression of checked genes

Lus10010421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.