Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31910 624 / 0 GHMP kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012121 [exp] 910 / 0 AT1G31910 691 / 0.0 GHMP kinase family protein (.1.2) Lus10012122 [exp] 808 / 0 AT1G31910 605 / 0.0 GHMP kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098100 [exp] 712 / 0 AT1G31910 684 / 0.0 GHMP kinase family protein (.1.2) Potri.001G135500 [exp] 680 / 0 AT1G31910 593 / 0.0 GHMP kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010422 pacid=23154074 polypeptide=Lus10010422 locus=Lus10010422.g ID=Lus10010422.BGIv1.0 annot-version=v1.0 ATGGCCGTAGTTGCTTCAGCTCCTGGGAAAGTGCTGCTGACGGGAGGATACTTGATTCTGGAGAGACCCAATTCCGGGATCGTGCTGAGCACAAGTGCCA GATTCTACGCAATTGTTAAACCCCTTCACGACCGGCTGGACCCCGCTAGCTGGGCATGGAGTTGGTCTGATGTGAAGTTGACTTCTCCCCAGCTGGGGAG GGAGAGCATGTACAAGTTGAATCTCAAGAATTTAACTCTTCAGTCTGTTTCCTCCAGTGACTCGAGGAATCCTTTTGTCGAACACGCTCTGGAGTATGCT ATTGCAGCTGCCAACGCTACCTTTGATAGAACTAAGAAGGATGCCTTGAACAAACTTCTCTTGCAAGGTCTTGACATCACGATATTGGGCGGTAACGACT TCTACTCGTATCGTAATCAGATCGAAGCTCGCGGTTTACCTTTGACTCCAGAATCACTGGCTGCACTGCCACCCTTCATGTCCATCACATTCAATGCTGG TGATGACACAAATGGGCCGAACTGCAAGCCCGAAGTTGCCAAAACAGGGCTCGGATCCTCGGCAGCAATGACCGCAGCAGTGGTCGCTGCACTGCTCAAG TACTTCCGACTAGTGGATCTTGTCGAAACTTCGGATCTCGACGTGGTTCATATCATAGCTCAAAGTGCTCACTGCATTGCTCAAGGGAAAGTTGGCAGCG GGTTCGATGTCAGCTCTGCTGTCTACGGTAGCCATCGCTATGTCCGGTTTTCACCCTCCGTGCTTTCATCTGCTCAGGATGCGGCGAGAGGAGTGCCATT ACAGGAAGTCATAGTTGATATCCTGAAAGGAGATTGGGACCATGAGAGGACCAAGTTCTCTTTGCCACCATTGATGACCCTGTTACTAGGAGAACCAGGA AGCGGAGGATCGTCAACTCCATCAATGGTAGGCGCGGTGAAAAGATGGCAGAAAGCTGATCCGCAGAAGTCCGGAGAAACATGGAATCAGTTATCAGCAG CAAATTCAGCTCTCGAAATGCAGCTTAAGGCTTTAAGCAATCTTGCAGAAGAGCATTGGAGTTCATATAAATGTGTGATCGATAACTGCAGCATAACGAA GGCCGAGAAGTGGGCCGAGCAGGCTGCAGATCTCAACCAAGAAGCTGTGGTTAAAGCATTACTGGCATCACGAGCAGCCATGCTCGAGATCAGAAAGCTT ATGCGGCAGATGGGAGAAGCTGCTGGTGTTCCGATAGAGCCTGAATCCCAGACCAAACTCTTGGATGCTACGGCTAACGTGGAAGGAGTTCTCCTGGCCG GAGTCCCCGGTGCTGGAGGTTTCGACGCCATATTCGCAGTGACGTTGGGTGACTCCCGCAGCAACGTTGCAGCAACTTGGAGCTCATTCAACGTCTTAGC ATTGCTGGTGAGAGAAGACCCTTGCGGGGTTCATATCGAGAATGGCGACCCGAGAAGCCAAGAGATCGCTTCTGGCGTCTCTGCAATGAGCATCCAGTAG
AA sequence Show only first row Show all	>Lus10010422 pacid=23154074 polypeptide=Lus10010422 locus=Lus10010422.g ID=Lus10010422.BGIv1.0 annot-version=v1.0 MAVVASAPGKVLLTGGYLILERPNSGIVLSTSARFYAIVKPLHDRLDPASWAWSWSDVKLTSPQLGRESMYKLNLKNLTLQSVSSSDSRNPFVEHALEYA IAAANATFDRTKKDALNKLLLQGLDITILGGNDFYSYRNQIEARGLPLTPESLAALPPFMSITFNAGDDTNGPNCKPEVAKTGLGSSAAMTAAVVAALLK YFRLVDLVETSDLDVVHIIAQSAHCIAQGKVGSGFDVSSAVYGSHRYVRFSPSVLSSAQDAARGVPLQEVIVDILKGDWDHERTKFSLPPLMTLLLGEPG SGGSSTPSMVGAVKRWQKADPQKSGETWNQLSAANSALEMQLKALSNLAEEHWSSYKCVIDNCSITKAEKWAEQAADLNQEAVVKALLASRAAMLEIRKL MRQMGEAAGVPIEPESQTKLLDATANVEGVLLAGVPGAGGFDAIFAVTLGDSRSNVAATWSSFNVLALLVREDPCGVHIENGDPRSQEIASGVSAMSIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31910			GHMP kinase family protein (.1...		Lus10010422 [exp]	0	1
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	6.5	0.7890
AT5G17570			TatD related DNase (.1)		Lus10021077 [exp]	34.3	0.7490
AT5G15680			ARM repeat superfamily protein...		Lus10031962 [exp]	51.0	0.7564
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	56.9	0.7552
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	71.9	0.7314
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	73.0	0.7498
AT1G17030			unknown protein		Lus10024442 [exp]	74.6	0.7421
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10010141 [exp]	76.0	0.7445
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	97.3	0.7277
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	122.5	0.7308

Compare expression of checked genes

Lus10010422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.