Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45620 610 / 0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT4G19006 610 / 0 Proteasome component (PCI) domain protein (.1) AT3G02200 48 / 7e-06 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012120 [exp] 717 / 0 AT4G19006 665 / 0.0 Proteasome component (PCI) domain protein (.1) Lus10013192 [exp] 52 / 6e-07 AT5G15610 578 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10030706 [exp] 47 / 2e-05 AT5G15610 554 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G135200 [exp] 653 / 0 AT5G45620 653 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.003G098400 [exp] 651 / 0 AT5G45620 647 / 0.0 Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.014G047200 [exp] 48 / 5e-06 AT1G02090 394 / 5e-140 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.002G137400 [exp] 44 / 8e-05 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10010423 pacid=23154135 polypeptide=Lus10010423 locus=Lus10010423.g ID=Lus10010423.BGIv1.0 annot-version=v1.0 ATGAGTGCTCTCCAGTACCTCGAATCTCAGCGCAACGCGCAGCCGGAGCTCGCCGAGTGGTACAACTCCCTCGCGGATCTGTACCAGAAGAAGCTATGGC ACCAGCTCACTCTCAAGCTCGAGCAGTTCGTCGCCCTCGCCGTCTTCCAGGCTGGTGATGCTCTCATCCAGCTATACCATAACTTCATCACTGACTTTGA GACGAAGATCAATCTGCTCAAGCTAGCTCACTTTGCTGTGGTAGTTTCACGGCAGTACCAGGAGAAAGAAGCTGCCATCAGCTACCTTAATGGGGTGATC GAGAAGCTAAGGGAGACCAGGGAGCAGCGCATAGAGGAGCCGATACTTTATATTAAGATGCAAATAGCCATGTTTAAGCTCGAGCAAGGAGATCAGAAGG AGAGTAAGAAGCTTCTAGACGATGGTAAGAGCACTCTGGACAGCATGACTGACATTGATCCCTCGGTGTATGCCAGTTATTACTGGGTTGCATGTCAGTA CCATAAGTATCGTCAGGAGTTTGCCGATTTCTACAGAAGTGCACTTCTGTATTTGGCTTATACGTCGGTGGAGTCGCTTTCTGACTCGTTTAAGCTGGAT TTGGCATTTGATCTGTCTCTTTCAGCTCTTCTCGGAGATAACATCTACAACTTTGGAGAGTTGCTTGCCCATCCTATTGATTTGGCATTTGATCTGTCTC TTTCAGCTCTTCTCGGAGATAACATCTACAACTTTGGAGAGTTGCTTGCCCATCCTATTATAAAGAGCCTGTCAGGTACACAAGTCGAGTGGCTCTACTA TATCCTCCAAGCATTCAATGCTGGCGATTTAACTCGCTATCAAGAACTATGGCAAGTGCACACCTCTGCCCTGAAGTCTCAGCCGGCCTTAGTCGAAAAT GAGAAGAAGCTGCTGGAAAAGATCAACATTCTCTGCCTTATGGAAATCATCTTTAGTCGTCCTTCCGAAGATCGAACTATTCCACTGAAGGCCATTGCTG AGCGAACAAACCTTTCAATCGAAGAGGTCGAACATCTCCTAATGAAGAGTCTCTCTGTCCATCTGATTGAAGGCATAATCGACCAAGTCGAAGGGACGGT GCATGTGTCGTGGGTGCAGCCTCGCGTCCTGGGGATCCCGCAGATCAAGTCATTGCGAGATAGGCTGGATGGCTGGTTAGGCAAAGTACACACGGCGTTG CTGTCCATCGAAGCCGAAACGCCTGACCTTGTAGCATCATAG
AA sequence Show only first row Show all	>Lus10010423 pacid=23154135 polypeptide=Lus10010423 locus=Lus10010423.g ID=Lus10010423.BGIv1.0 annot-version=v1.0 MSALQYLESQRNAQPELAEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVVVSRQYQEKEAAISYLNGVI EKLRETREQRIEEPILYIKMQIAMFKLEQGDQKESKKLLDDGKSTLDSMTDIDPSVYASYYWVACQYHKYRQEFADFYRSALLYLAYTSVESLSDSFKLD LAFDLSLSALLGDNIYNFGELLAHPIDLAFDLSLSALLGDNIYNFGELLAHPIIKSLSGTQVEWLYYILQAFNAGDLTRYQELWQVHTSALKSQPALVEN EKKLLEKINILCLMEIIFSRPSEDRTIPLKAIAERTNLSIEEVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDGWLGKVHTAL LSIEAETPDLVAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	0	1
AT2G35790			unknown protein		Lus10023498 [exp]	2.8	0.8542
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	3.5	0.8814
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	5.7	0.8816
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	11.8	0.7813
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	11.9	0.8728
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10039105 [exp]	12.6	0.8142
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	14.4	0.8334
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	14.5	0.8503
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	15.9	0.8344
AT3G18310			unknown protein		Lus10025089 [exp]	19.6	0.7931

Compare expression of checked genes

Lus10010423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.