Plant FIBer expression Database

Lus10010424 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45610 224 / 3e-64 SUV2 SENSITIVE TO UV 2, protein dimerizations (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012118
[exp]
922 / 0 AT5G45610 286 / 2e-87 SENSITIVE TO UV 2, protein dimerizations (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G134800
[exp]
386 / 1e-124 AT5G45610 203 / 3e-56 SENSITIVE TO UV 2, protein dimerizations (.1)
Potri.003G098700
[exp]
384 / 1e-123 AT5G45610 311 / 3e-96 SENSITIVE TO UV 2, protein dimerizations (.1)
PFAM info
Representative CDS sequence
>Lus10010424 pacid=23154128 polypeptide=Lus10010424 locus=Lus10010424.g ID=Lus10010424.BGIv1.0 annot-version=v1.0
ATGAGCGGCGAAAATGAAGACGCAGATTTCGATGAATGGGACGACGACTTCGTGAACGAGCTTATACAGAGGGAAGAGATTGCTCTCACCGCCTGCTCCT
CCTCTTCTTCGAAACTCAAGCCCTCCTTCCCCCTTCCGCCGCCGGTTCGTCCCGCCGATCATAGTTACTCGCCTCCGCGCGAACTAACTCAGAGACCTCT
CGTACTTGAAAACTCCGATCGCAATGGATCCCCTTCACTTCCCCAGAATGACATTGCGAAAGAGGAGGAAATTCGGCGCCTCAAGACGGAGTTGGAACTA
CGTTCTAAGCAACTGGCCCAAATGGAATATGAATTCACTGAGCTGAAGAAGGAGAGGCCTAAGAGAGATGAGCAGGTTGAAAGCTCCCGTTCTCGCTGTG
GTGGATTATTTCATGATGTTGTGCTGTATACCGAACAAGTTTTCTCAGGGATAGGAGTGAGGTTGCTAGATTGTAACTGCTACGAAGTTTTGAATTCTGA
GGGTTGCCTTGCAGGGACGGTAAAGGTTTTTATATGGATGCTCAGCACGACGATTTTACGACCCAAAATAATGAAGGTCTGGGGGATTGTCGGAGAGAAA
GATGTAGGTTTTATGGTGGCTTCATCCTCAAGGGCTGTAGGGATTCAAACTGATAAAGATGACGATCCTGTTAGAGGAGATGCAAACCATGGTGCATCGT
CTTCTGTGCGCCTTCGGGAGGAGTTGCGATCCATTTGGGGATCTACAAGCCACCAACACTCGGGAAGAAATTTCATCTCTAAGTTGTTAATGGCCTGTGC
AGAAGAGTTACGTGTTCTGTTAGGGACCATGAGCTTAAGTATGCACCCGGCTGGAGGAACAAGGTCTACTGCTGCCGAAACTGCACCTTCTGCTTCTCTT
TTGAACCATGTACACGGGTTATGTCCTGCTGATGCTACAACAGTATCTGAATTGTACAATGTCATGATAGAGATCAGTAATGGGCTGCTAAAGGTGGAAG
CTTTGCTTGGACCTCTGCTTGAACACTGTGTCATTATGAATCACCTTCTAAGTCTTGGAAGCAAGTCGAGAAGGGACAATGTCAAAGTCGAGGGACTTCA
CTGCGACAGCAGCAGCAAGGTGTCTTATGGTGGACTTTCGGATATCAGTAATCTATCTGCTGTCTCTTTTGTAAACTGGCATTCGCTTTTTGAACTAATG
CTTCAAATTGCCATGGACAACAATAACGAAAGTGTGCGGTCTGAGGCTATATCTATCATGAACTTGATTATTTCGACAAGTAGTGCATTCGTGGAAAGGG
AAAAGTATGGACCAAGAATGGTGGTACAAAGCATTGCTCAATTTCTCAAAAGGGAATCTGGCTTGTCCGTGCAAAAGGCAGCTGTTCGTCTGCTGTTCTT
GTTGCTAAACTGTATGCTCCCCCTATCAATTTGTCCTTACTCGTTCACAGGTCCCAAGATATTGAACACTTTCTGCTCTGGTTGCCTCGAGGAGCGTGCC
CTTGCTGCAAAGGGCGAGAGAAACATCTCGAGTACTTGCAATGGGTACAGCTTCGTCCTCATCGGTTTGGCAGAATGCATATCTTGCAGCGGGAATAGTT
TACAGCAAATAGAACTTTGCAAAAATGCTATTGCTACACTGGCATTTCTGGCTGCTTCCGAGAAGTCTGGCTACGAAATACTTGTTAGCCACCGAGTAGC
TGGAGGGGCAAACTTTCTTATGCTGATCTTGCAAGAATTGGCATCAGATAGGAGTTCGGAAGGATCAGACTCTGTTGAATCTGTCGAAAAAGTTCGAGCG
AGGACGATGCTGATTAGGGAGGCGCTGATACTGCTGAATCGACTCGTATCCCACCCGGGGTCCTCAGCCATAGTGCTGCGAGTGCTAACTGGCAGCAGAG
ACATGGCCAGTTTGACGATTGATGTCGCTAGTAGGCTGTCGTCGAAAGAACAGACCCCAAACTACTACACTAGTACAGCTGGAGAATCAGAAGCTTTGGA
CTTGGCTAAGAAATTCAAGAGAAGAGTGTACGCTTACCTGGGATCTGTTGTTGCTTAA
AA sequence
>Lus10010424 pacid=23154128 polypeptide=Lus10010424 locus=Lus10010424.g ID=Lus10010424.BGIv1.0 annot-version=v1.0
MSGENEDADFDEWDDDFVNELIQREEIALTACSSSSSKLKPSFPLPPPVRPADHSYSPPRELTQRPLVLENSDRNGSPSLPQNDIAKEEEIRRLKTELEL
RSKQLAQMEYEFTELKKERPKRDEQVESSRSRCGGLFHDVVLYTEQVFSGIGVRLLDCNCYEVLNSEGCLAGTVKVFIWMLSTTILRPKIMKVWGIVGEK
DVGFMVASSSRAVGIQTDKDDDPVRGDANHGASSSVRLREELRSIWGSTSHQHSGRNFISKLLMACAEELRVLLGTMSLSMHPAGGTRSTAAETAPSASL
LNHVHGLCPADATTVSELYNVMIEISNGLLKVEALLGPLLEHCVIMNHLLSLGSKSRRDNVKVEGLHCDSSSKVSYGGLSDISNLSAVSFVNWHSLFELM
LQIAMDNNNESVRSEAISIMNLIISTSSAFVEREKYGPRMVVQSIAQFLKRESGLSVQKAAVRLLFLLLNCMLPLSICPYSFTGPKILNTFCSGCLEERA
LAAKGERNISSTCNGYSFVLIGLAECISCSGNSLQQIELCKNAIATLAFLAASEKSGYEILVSHRVAGGANFLMLILQELASDRSSEGSDSVESVEKVRA
RTMLIREALILLNRLVSHPGSSAIVLRVLTGSRDMASLTIDVASRLSSKEQTPNYYTSTAGESEALDLAKKFKRRVYAYLGSVVA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Lus10010424
[exp]
0 1
AT2G25870 haloacid dehalogenase-like hyd... Lus10006031
[exp]
1.0 0.8954
AT1G13040 Pentatricopeptide repeat (PPR-... Lus10036129
[exp]
11.5 0.8354
AT1G63810 unknown protein Lus10026014
[exp]
12.1 0.8930
AT5G14580 polyribonucleotide nucleotidyl... Lus10008763
[exp]
15.0 0.8819
AT3G57430 OTP84 ORGANELLE TRANSCRIPT PROCESSIN... Lus10015414
[exp]
19.5 0.8198
AT4G21130 EMB2271 EMBRYO DEFECTIVE 2271, Transdu... Lus10023255
[exp]
19.7 0.8872
AT4G00026 SD3 SEGREGATION DISTORTION 3, unkn... Lus10028190
[exp]
21.2 0.8618
AT5G26860 LON1, LON_ARA_A... lon protease 1 (.1) Lus10010919
[exp]
23.0 0.8797
AT2G18220 Noc2p family (.1) Lus10027010
[exp]
23.4 0.8756
AT1G71850 Ubiquitin carboxyl-terminal hy... Lus10017896
[exp]
25.6 0.8728

Lus10010424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.