Plant FIBer expression Database

Lus10010425 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31940 186 / 2e-61 unknown protein
AT2G35585 166 / 3e-53 unknown protein
AT2G01913 43 / 9e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012117
[exp]
301 / 6e-107 AT1G31940 182 / 9e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135000
[exp]
217 / 2e-73 AT1G31940 194 / 1e-64 unknown protein
Potri.010G101500
[exp]
63 / 1e-12 AT2G35585 60 / 2e-11 unknown protein
Potri.008G140000
[exp]
60 / 1e-11 AT2G35585 61 / 4e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10010425 pacid=23154085 polypeptide=Lus10010425 locus=Lus10010425.g ID=Lus10010425.BGIv1.0 annot-version=v1.0
ATGGTGGGGATTTTCTCCAGACTCTCTGTTGGTAGCAGAGCTTCCCACAGACGAACACAGAGCGCCCTCGATGATAGGGAAGCTATGCCACCAAGTGCAG
ATATTCCCGGCTTGGAGACTGTGGCTTCATCTACTGCTCCCCATGGCATTCAGGTGACCGTGGAGTTTAAGCCGGTTGAGCATCCGATCGAGCCTCTTGA
CAATGATCAACCTATCCAGTGTCCGGCACCTGAACCTTCGATTCTTAATGATGGAAGAATATGGAAGGAGAGGGTAACTGCGACGGTACGAAGGAGGAAC
GACTTGCCGGTCATGAGAGAAGATGGCAGTGAAGCTCTGGAACCTGAATCTGCAGCAGGGTCTCGTCGGCCTCCAATGAGATCGAATCGGTTGATCCTAC
CGTCTGTCAGTGCCCCGGAACACAATTTGCTGCAGCTACTAGAGGAATGCAATGCTTCTGCTATCTGA
AA sequence
>Lus10010425 pacid=23154085 polypeptide=Lus10010425 locus=Lus10010425.g ID=Lus10010425.BGIv1.0 annot-version=v1.0
MVGIFSRLSVGSRASHRRTQSALDDREAMPPSADIPGLETVASSTAPHGIQVTVEFKPVEHPIEPLDNDQPIQCPAPEPSILNDGRIWKERVTATVRRRN
DLPVMREDGSEALEPESAAGSRRPPMRSNRLILPSVSAPEHNLLQLLEECNASAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31940 unknown protein Lus10010425
[exp]
0 1
AT1G60750 NAD(P)-linked oxidoreductase s... Lus10041185
[exp]
1.0 0.8882
AT4G26470 Calcium-binding EF-hand family... Lus10008357
[exp]
2.8 0.8684
AT4G38690 PLC-like phosphodiesterases su... Lus10034483
[exp]
3.5 0.8277
AT5G35460 unknown protein Lus10017161
[exp]
5.0 0.8565
AT1G56230 Protein of unknown function (D... Lus10029871
[exp]
5.5 0.8387
AT1G62990 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabi... Lus10024485
[exp]
5.7 0.8412
AT3G08890 Protein of unknown function, D... Lus10012232
[exp]
6.2 0.8658
AT2G33990 IQD9 IQ-domain 9 (.1) Lus10025425
[exp]
8.1 0.8383
AT1G35720 ATOXY5, ANNAT1 annexin 1 (.1) Lus10008227
[exp]
9.0 0.8404
AT1G63220 Calcium-dependent lipid-bindin... Lus10002235
[exp]
10.9 0.8208

Lus10010425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.