Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 607 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 498 / 2e-172 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT1G13460 496 / 4e-172 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 491 / 8e-170 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G21650 491 / 2e-169 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G09880 482 / 1e-166 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 473 / 7e-163 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 454 / 5e-156 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 440 / 4e-150 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012116 [exp] 922 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10017752 [exp] 865 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10033069 [exp] 704 / 0 AT5G25510 529 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 586 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 553 / 0 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 523 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 514 / 8e-179 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 510 / 2e-177 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 498 / 3e-172 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073925 [exp] 750 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 601 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 599 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 518 / 3e-180 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 509 / 1e-176 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 504 / 8e-175 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 499 / 8e-173 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 497 / 3e-172 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 496 / 3e-172 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 493 / 1e-170 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10010426 pacid=23154096 polypeptide=Lus10010426 locus=Lus10010426.g ID=Lus10010426.BGIv1.0 annot-version=v1.0 ATGCATCCGTCGATTAAGGGAGCAAGATATCAAGCCCCAGCTTTGCTCATTATATGGAAGTTCTCTCTGAAGTCAATTTGCTGGTTCAGTATATTCCAAA TTCTCCAGGAAGAGGCTAAGTTACTTAACCTGATGCCAGAGAAAAGTCTATTCCAAAGCCCTGTTGTAGAGGCTACAGAAGTTCACTTTGATTTTTCCAG TCCAGACATCCAATCAGCAAGTGCCATGCTCAAGCAAATCCTTAGTAAAATCCCCCGCAAGTCTCCAAAATCTGACCCCCTAGAGGCCACAGTGATTAAT GATAATGGAGGAAGCTCGTTTTCGAGTCGGTTGAATGTTGTTAAAAGGGTATCCTCGGCCGTTTTTCCTTCAAGCATTATGGCTGGAGTTGATGCAGTGG AGCCCCATCTATCCTTCAAGGATGTTTCACCGGCGCAGAAGCAGAATCTGTTTGTTAGTAAACTAAACCTTTGCTGTAAGATACCTGATTATTATAGCGA TCCAGACAAGACCGATACCTTGATGGATATTAAACGAGAACCATTGGTGGAGCTTGTTGATTTTGTTTCTTCAGGATCAGCAAAGTTCACTGAACCGGCT ATTGCAGCAATGTGTAAGATGTTTGCAGCAAACCTTTTCAGGGTCTTCCCTCCAAAGTTCACTGAAGATGAAGAGCCGATGTTCGATCCTGCTTGGTCGT ATTTACAAATCGTATATGATCTGCTGCTTCGTTTCACGAGCTTGGTGGATGCAAAGACGGCAAAGAAGCATGTAGATCATGCTTTTGTTTCGAGAGTACT CGACCTATTTGATTCCGACGATCCAAGAGAAAGGGAATGTTTGAAAACTGTCCTACATGGGATTTATGGGAAATTCATGGTACACAGGCCCTTCATAAGG AAAAGTGTCGGCAATATCATCTACCGGTTTGTCTACGAGACTGAACGACATAATGGAATTTCCGAGCTGTTGGAGATCTTCGGTAGCGTTATTAGCGGGT TTGCTCTACCTTTGAAGGAAGAGCACAAGTTGTTTCTGTGGAGGGCTTTGCTACCTCTGCATAAACCAAAATCGGTTGGCGTTTATCACCAACAGTTAAC ATTTTGTGTTGTGCAGTTTGTGGACAAGGATCCCAAATTGGCTGGTTCAGTGATCAAAGGGCTGTTGAAGTACTGGCCTTTGACGAACAGCCAAAAGGAG TTAATGTTTATAAGTGAGATGGAAGAGATTTTGGAAATGACTAGCATGGATGAGTTTCAGAAGGTCATGGTGCCATTGTTTCGGCGAATCGGAGGTTGTC TGAATAGTTCCCATTATCAGGTCGCAGAACGAGCTCACTTGCTATGGAACAACGAGCGAATTGTGAACCATCTTATTTTACAGAATCGGGAGGTGATTAT GCCGATCATCTTCACAGCTCTTGAACACAACAGTCAGAACCACTGGAACCAAGCAGTTCTGAACCTTACACAGTACGTAAGGAAGATATTCCTGGAGATG GACGAAGAGCTAATGATGGCGTGCCAACGCAAGCTGGAGGAAGAACATTCGAAGCCCAATGTGGCGGCGGAGAAGAGGAGATTAACCTGGGAAAACTTGG AAAACGCTGCTGGAACGGGTTTCATCATCAACTCACCCATTTCGGCATGA
AA sequence Show only first row Show all	>Lus10010426 pacid=23154096 polypeptide=Lus10010426 locus=Lus10010426.g ID=Lus10010426.BGIv1.0 annot-version=v1.0 MHPSIKGARYQAPALLIIWKFSLKSICWFSIFQILQEEAKLLNLMPEKSLFQSPVVEATEVHFDFSSPDIQSASAMLKQILSKIPRKSPKSDPLEATVIN DNGGSSFSSRLNVVKRVSSAVFPSSIMAGVDAVEPHLSFKDVSPAQKQNLFVSKLNLCCKIPDYYSDPDKTDTLMDIKREPLVELVDFVSSGSAKFTEPA IAAMCKMFAANLFRVFPPKFTEDEEPMFDPAWSYLQIVYDLLLRFTSLVDAKTAKKHVDHAFVSRVLDLFDSDDPRERECLKTVLHGIYGKFMVHRPFIR KSVGNIIYRFVYETERHNGISELLEIFGSVISGFALPLKEEHKLFLWRALLPLHKPKSVGVYHQQLTFCVVQFVDKDPKLAGSVIKGLLKYWPLTNSQKE LMFISEMEEILEMTSMDEFQKVMVPLFRRIGGCLNSSHYQVAERAHLLWNNERIVNHLILQNREVIMPIIFTALEHNSQNHWNQAVLNLTQYVRKIFLEM DEELMMACQRKLEEEHSKPNVAAEKRRLTWENLENAAGTGFIINSPISA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25510			Protein phosphatase 2A regulat...		Lus10010426 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	13.1	0.8321
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	13.6	0.8184
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	26.4	0.8180
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	26.4	0.7951
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	27.8	0.8159
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	32.7	0.8124
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	34.5	0.7626
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	36.2	0.7143
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	41.5	0.7982
AT1G72300			Leucine-rich receptor-like pro...		Lus10019722 [exp]	41.8	0.8001

Compare expression of checked genes

Lus10010426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.