Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32170 441 / 4e-156 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 426 / 7e-150 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G14720 352 / 6e-121 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 348 / 2e-119 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G10550 238 / 2e-76 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 228 / 7e-73 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 219 / 3e-69 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT3G25050 212 / 9e-67 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G65730 209 / 9e-66 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT5G13870 204 / 1e-63 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012115 [exp] 516 / 0 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10030760 [exp] 363 / 4e-125 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10013240 [exp] 360 / 3e-124 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10029000 [exp] 356 / 2e-122 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029165 [exp] 229 / 3e-73 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 228 / 2e-72 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 209 / 3e-65 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 208 / 4e-65 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10025919 [exp] 207 / 8e-65 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136100 [exp] 475 / 3e-169 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 465 / 3e-165 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.010G102300 [exp] 352 / 7e-121 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 348 / 3e-119 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.009G163850 [exp] 293 / 1e-98 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 236 / 6e-76 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 220 / 9e-70 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.013G152400 [exp] 199 / 2e-61 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.009G006600 [exp] 196 / 2e-60 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.014G140300 [exp] 193 / 2e-59 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10010427 pacid=23154089 polypeptide=Lus10010427 locus=Lus10010427.g ID=Lus10010427.BGIv1.0 annot-version=v1.0 ATGGACGGCCTTCCTTCTTCCGCCATTTCTCCTTGTTTTCTTCTTCCTCTTCTCTTGTTGGTCACCATTTCTTCCGTTGCTCGAGCTTCGTCCTCGTCGT CGTTCAATCTCTCTACTGTTTCGTTCGACGATGCGTACTCTCCGCTTTTCGGCCATTCCAACCTCCTCCGCTCCCCCGATGGCCGTTCCGTCCGCCTCCT CCTCGACCGCTCCACCGGGTCGGGATTCATATCCTCGAAAATGTACAACTATGGGTTCTTTAGCGCGAACATCAAGCTCCCCGGGGAGTACACCGCCGGC GTCTGCGTTGCCTTCTATACATCAAATGGCGATGTATTCGAGAGGAACCACGACGAGTTGGACTTCGAGTTTCTAGGTAACGTGAAGGGGAAGCCGTGGA GGTTCCAAACGAACTTGTACGGTAACGGGAGCACACATCGCGGACGGGAGGAGCGGTATAGCCTCTGGTTCGATCCTTCAAAGGAGTTTCATCGATATAG CATCTTGTGGACACCTCGTCATATCATATTCTATATTGACGATGTCCCGATTCGAGAGGTGATTCGAAACTTGGAGATGGGCGGGGAGTACCCATCAAAG CCTATGTCCCTCTATGCCACAATTTGGGATGCATCTAGCTGGGCGCCCTCCGGTGGCCGGTTCAGGGCAGACTACGGCTACGCGCCTTTCGTGGCCGAGT TCAAGGACCTTGCCCTAGACGGCTGCCCTATCGAAGCAGTCGAACAACTCCCGACGGTGGAGAATTGCTCCGACAGCCATGAACGTCTCGCCACCGCGGA TTATTCCACGATCACTGCAAAACAGCGTCACGCAATGCGCAGATTCAGGCAACGGTACACTTACTATTCGTATTGCTACGATAGCCTCCGGTACCCGGTT CCACCGCCGGAATGTGTAATTGATGCGCAGGAGAAGTTGAGGTTTAAGGATACAGGCAGGTTGAAATTCGGGGGCAGCCACCGGAGCCCCAAACGCCGGT CCAAGAGTCGGCGGAGCCGGCCGGTTCGGGTTGAGACGGTTGATGACCCGGATATGTGA
AA sequence Show only first row Show all	>Lus10010427 pacid=23154089 polypeptide=Lus10010427 locus=Lus10010427.g ID=Lus10010427.BGIv1.0 annot-version=v1.0 MDGLPSSAISPCFLLPLLLLVTISSVARASSSSSFNLSTVSFDDAYSPLFGHSNLLRSPDGRSVRLLLDRSTGSGFISSKMYNYGFFSANIKLPGEYTAG VCVAFYTSNGDVFERNHDELDFEFLGNVKGKPWRFQTNLYGNGSTHRGREERYSLWFDPSKEFHRYSILWTPRHIIFYIDDVPIREVIRNLEMGGEYPSK PMSLYATIWDASSWAPSGGRFRADYGYAPFVAEFKDLALDGCPIEAVEQLPTVENCSDSHERLATADYSTITAKQRHAMRRFRQRYTYYSYCYDSLRYPV PPPECVIDAQEKLRFKDTGRLKFGGSHRSPKRRSKSRRSRPVRVETVDDPDM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	0	1
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	1.0	0.9554
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	3.2	0.9442
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	4.2	0.9531
AT5G17680			disease resistance protein (TI...		Lus10038249 [exp]	4.7	0.9194
AT1G74790			catalytics (.1)		Lus10033116 [exp]	5.3	0.9458
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	6.0	0.9434
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	6.2	0.9461
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	8.1	0.9310
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	9.0	0.9375
					Lus10039350 [exp]	9.7	0.9233

Compare expression of checked genes

Lus10010427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.