Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04130 1024 / 0 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 972 / 0 GYRB1 DNA GYRASE B1 (.1) AT5G04110 247 / 8e-74 GYRB3 DNA GYRASE B3 (.1) AT3G23890 91 / 1e-18 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012114 [exp] 1225 / 0 AT5G04130 1060 / 0.0 DNA GYRASE B2 (.1.2) Lus10019720 [exp] 102 / 4e-22 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 100 / 2e-21 AT3G23890 1682 / 0.0 topoisomerase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036200 [exp] 1098 / 0 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Potri.006G039400 [exp] 1085 / 0 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.001G264000 [exp] 107 / 1e-23 AT3G23890 1716 / 0.0 topoisomerase II (.1.2) Potri.009G058900 [exp] 97 / 2e-20 AT3G23890 1691 / 0.0 topoisomerase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0413 [flax] [poplar] PF00986 [flax] [poplar] DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [flax] [poplar] S5 PF00204 [flax] [poplar] DNA_gyraseB DNA gyrase B
Representative CDS sequence Show only first row Show all	>Lus10010428 pacid=23154081 polypeptide=Lus10010428 locus=Lus10010428.g ID=Lus10010428.BGIv1.0 annot-version=v1.0 ATGTCTTCCTCCATTGCTACTGAGGCCTTTCAGGAGAATGGGCAGCCGAACGCTTATGGCTCGGACCAAATTCAGGTGCTGAAAGGGTTGGACCCTGTGA GGAAAAGGCCAGGGATGTACATAGGCAGCACCGGCCCTCGTGGATTGCATCATTTGGTGTATGAGATATTGGACAATGCTGTCGACGAGGCTCAAGCGGG GTATGCTTCGAGGGTAGAATTGATCTTACACGCTGATAATTCTGTCAGCATTACAGACGATGGGCGAGGAATTCCTACCGATTTGCATCCAGCAACCAAG AAATCCGCCTTAGAGACTGTGTTGACGGTTTTACATGCTGGAGGCAAGTTCGGTGGTTCAAATAGTGGCTACAAAGTTTCCGGTGGACTGCATGGTGTGG GATTATCGGTTGTCAATGCCCTCTCTGAGAATTTGGAAGTAACAGTTTGGCGTAATGGGATGGAGTACAAGCAGAAGTATTCACGTGGAAACCCTGTAAC AAGTCTCATTGGTCGTTCGCTTCCGGTTGAATCAAACAATCGCAAAGGGACTATGATAAGATTTTGGCCCGACAAAGAAGTATTTACCACTGAAATACAG TTTGATCACAACACTATTAGTGGACGAGTCAGGGAGCTTGCTTTCCTGAATCCAAAACTTCATATAACTATCATAAAAGAAGATTCTGATCCAGAAAAAA GCCAGTGCGATGAGCATTATTATGCAGGGGGTCTGGTCGAATATGTGAACTGGCTAAACAATGACAAGAAACCACTCCATGATGTTGTGAGCGTCAGCAA AGAACTTAATGGAGTCACAATTGACATGGCTTTTCAATGGTGTTCGGATGCATACTCCGATACAATACTAGGATATGCAAATAGCATACGTACTATTGAC GGTGGCACACATATCGATGGTTTCAAGGCTTCGTTAACAAGAACTCTTAACAGCCTTGGGAAGAAGTCGAAGTTAATGAAGGACAAAGATATTAACTTAA GTGGTGAACATGTACGAGAGGGATTGACATGCATTATCTCGGTCAAAGTACCGAGCCCTGAGTTCGAAGGACAAACAAAGACAAGATTGGGCAATCCTGA AGTTCGGAAAGTTGTTGATCAAGCCGTTCAAGAGCATGTCACCGAGTATTTTGAATTGCACCCGGATGTCCTTGATTCAATCCTTTCAAAATCCCTGAAT GCCCTCCAGGCAGCTTTAGCAGCAAAGAGAGCTAGAGAATTGGTCCGGTCAAAGAGTGTATTAAGGTCATCATCTCTTCCCGGGAAGCTGGCTGATTGCT CATCTACCAATCCTGAAGAAGCTGAAATTTTTATTGTTGAAGGTGATTCAGCTGGTGGAAGTGCTAAGCAGGGTCGAGATAGGCGGTTCCAGGCTATCCT ACCTCTTCGAGGGAAAATTTTAAACATCGAAAGAAGGGACGAGGCAGCAGTTTACAAGAACGAGGAGATTCAGAATCTGATACGTGCTCTTGGACTTGGA GTGAAGGGAGAGGAGTTCAAGAAGGAAGCTCTCCGTTATCATAAGATCATCATCTTAACTGATGCTGATGTCGATGGTGCTCACATCAGAACACTTCTGT TGACTTTCTTCTTCAGATATCAGAGAGCTCTATTTGATGAAGGTTGCATTTATGTTGGTGTTTCACCGCTGTACAAGGTTGAAAGAGGAAAGCAGGCTCA CTACTGCTATGATGAAGCAGAGCTGAAGAAGGTTCAGAGTTCGTTCCCTCAGAACGCTTCTTACACCATCCAAAGGTTCAAAGGGTTGGGAGAGATGATG CCTGTGCAACTGTGGGAAACGACGATGGATCCAGAGCGTAGGCTGCTGAAGCAACTAGTGGTCGAAGATGCAGCTGAGGCGAATGTCGTGTTCTCGTCTC TCATGGGAGCTCGGGTGGATACTCGAAAAGAGTTGATCAAGAATGCTGCAGCAATGATAAACATCGATCAACTCGACATCTAG
AA sequence Show only first row Show all	>Lus10010428 pacid=23154081 polypeptide=Lus10010428 locus=Lus10010428.g ID=Lus10010428.BGIv1.0 annot-version=v1.0 MSSSIATEAFQENGQPNAYGSDQIQVLKGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASRVELILHADNSVSITDDGRGIPTDLHPATK KSALETVLTVLHAGGKFGGSNSGYKVSGGLHGVGLSVVNALSENLEVTVWRNGMEYKQKYSRGNPVTSLIGRSLPVESNNRKGTMIRFWPDKEVFTTEIQ FDHNTISGRVRELAFLNPKLHITIIKEDSDPEKSQCDEHYYAGGLVEYVNWLNNDKKPLHDVVSVSKELNGVTIDMAFQWCSDAYSDTILGYANSIRTID GGTHIDGFKASLTRTLNSLGKKSKLMKDKDINLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVDQAVQEHVTEYFELHPDVLDSILSKSLN ALQAALAAKRARELVRSKSVLRSSSLPGKLADCSSTNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAVYKNEEIQNLIRALGLG VKGEEFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVSPLYKVERGKQAHYCYDEAELKKVQSSFPQNASYTIQRFKGLGEMM PVQLWETTMDPERRLLKQLVVEDAAEANVVFSSLMGARVDTRKELIKNAAAMINIDQLDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	1.0	0.9698
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	1.4	0.9678
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	2.6	0.9490
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	3.0	0.9640
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	4.5	0.9583
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	5.0	0.9583
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	6.6	0.9380
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	7.2	0.9200
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	7.7	0.9402
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	8.0	0.9415

Compare expression of checked genes

Lus10010428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.