Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 625 / 0 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 520 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 164 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 159 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 154 / 3e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07590 152 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 138 / 5e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 137 / 1e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 126 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012112 [exp] 1001 / 0 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 644 / 0 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10033698 [exp] 179 / 3e-49 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042574 [exp] 172 / 2e-46 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042757 [exp] 162 / 5e-43 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 158 / 9e-42 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029724 [exp] 157 / 2e-41 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 151 / 4e-40 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022033 [exp] 149 / 3e-39 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 752 / 0 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 729 / 0 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 484 / 5e-165 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 168 / 3e-45 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 155 / 8e-41 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 154 / 4e-40 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G051500 [exp] 150 / 4e-39 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063400 [exp] 149 / 1e-38 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G042500 [exp] 147 / 6e-38 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 145 / 2e-37 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010430 pacid=23154152 polypeptide=Lus10010430 locus=Lus10010430.g ID=Lus10010430.BGIv1.0 annot-version=v1.0 ATGTGGGCACTTCGCCGAGCTTCGAGTTCTCTCAGGTTACAAGGACTGAGGTCAGGAACTGGTCGAGCCGGGATCGTTAAACTTGAAAGCTTCTGTACTC AATTAGTACCGAACACTAACATTCTCGATGCCCCTCAGATCGTAGACAGGGCTTCCATGTTCCACCATGCTGTCAACGCCTCTTCAAAGATCTCTAGTCC GATGCGATGCTTGTCTTCCCAGGCTGGTACAGAGACTAGCTCGTCTGAAGATGACTCTGACGATGATGATGCCTTCTCTGAGCTGGAAGGTCCAGCAAGC GAGAAAACTGTGGCGGAAGGAAACGAAGATGATTTAGTTTCTGACCCTGACCTTGCTGATGATGAAGTCGACGAAGAGCTTGGGTTGTTGGATACCGAAA CAGATCCTAGCGAGAAACTATCGACGAGGAAAAGAGCTTCGTCGGAACTTTTCAATACCATCGTCTCCAATCAAAGTTTGTCTGTTGAAGCTGTTCTCAG TAACTGGGTGGAGGAAGGAAAGGATCTGGAGAAGTCAGAGATCAATTCAGCCATGCTTAATTTCCGTAGACGTCGGATGCACGGTAGAGCCTTGCAGCTT TCGGAGTGGGTAGACGCGAACAAGAAGCTTGATCTCGCAGAGAGGGACTACGCATCGCGTGTTGACTTGATCGCCAAGGTACGCGGGGTACAGAAAGCGG AGAGCTACGTAGAAACCATTCCGAAATCATTCAGAGGAGAGATCGTCTACAGAACTTTACTGGCGAACTGTGTTATAGCCAACAATGTTAAGAAGGCAGA AGAGGTGTTCAACAAAATGCGCAAGTTGGAGTTCGAGATGACAGCTTTCGCCTGCAACCAGCTGTTACTTCTCTACAAGAGGGTAGACAAGAAGAAGATA GCAGACGTTCTCCTTATGATGGAGAAGGAAAACGTTAAGCCCACGCTTTTCACTTACAAGCTTCTGATAGACACAAAGGGGCAAGCGAACGACATAGTCG GTATGGACGTGATAGTCAACACGATGAAGGCCGAAGGACTCGAGCTGGATCTCGCGACTCAAGCTATCATCGCCAAGCACTACGCTTTTGGTGGGCTTAA TGAGAAGGCCGAGGAGATTCTCAAGGAGATGGAAGGGGGGAATTTGGAAGGCAACCGCTGGGTGTGTAGAGTTTTGCTTCCTCTCTACGCTAACTTAGGA AAGGCGGATGAAGTTAGCAGGATTTGGAATTTCTGCAAGTCGAGCCCGGGGCTGGAGGAGTGTGTTGCTGCTATCGAGGCGTTTGGGAAGCTGAAGCGGA TCGAGGATGCGGAGGTTGTGTTCGAGAAGATGGAGTCGAAGTGGAAGAAGCTTTCGTCGAGGCACTACTTGTCGTTACTCAGGGTTTATGCCAACAACAA GATGCTGGAGAAGGGGAAGGATCTGGTCCGGAAAATGGGGGACAAGGGGTGCTGGTTGGGTCCCCTTACGTGGGACCCGCTGGTGAAGCTGTACGTGGAG GCTGGGGAAGTGGAGAAGGCGGACTCGATGCTGCACAAGGTGGTGCAGCAGAACAAGATGAAGCCGATGTTCAACTCGTACATAATGATCATGGACCAGT ACTCGAAGAGAGGCGATGTGCATAATGCTGAGAAGATCTTCTTTAAGATGAGGCAGGCTGGGTACGTTGCTCGTCTGAGGCAGTTCCAGGCTCTTGTTCA GACGTATGTGAATGCGAAGTTGCCAGCGTATGGGATCAGGGAGAGAATGAAGGCGGATAATATCTTCCCCAGCAAGGCGCTGGCTGCGCAGCTTGCTCAG GTTGACGCATTTCGGAGGACCACTGTCTCGGATTTGCTCGACTGA
AA sequence Show only first row Show all	>Lus10010430 pacid=23154152 polypeptide=Lus10010430 locus=Lus10010430.g ID=Lus10010430.BGIv1.0 annot-version=v1.0 MWALRRASSSLRLQGLRSGTGRAGIVKLESFCTQLVPNTNILDAPQIVDRASMFHHAVNASSKISSPMRCLSSQAGTETSSSEDDSDDDDAFSELEGPAS EKTVAEGNEDDLVSDPDLADDEVDEELGLLDTETDPSEKLSTRKRASSELFNTIVSNQSLSVEAVLSNWVEEGKDLEKSEINSAMLNFRRRRMHGRALQL SEWVDANKKLDLAERDYASRVDLIAKVRGVQKAESYVETIPKSFRGEIVYRTLLANCVIANNVKKAEEVFNKMRKLEFEMTAFACNQLLLLYKRVDKKKI ADVLLMMEKENVKPTLFTYKLLIDTKGQANDIVGMDVIVNTMKAEGLELDLATQAIIAKHYAFGGLNEKAEEILKEMEGGNLEGNRWVCRVLLPLYANLG KADEVSRIWNFCKSSPGLEECVAAIEAFGKLKRIEDAEVVFEKMESKWKKLSSRHYLSLLRVYANNKMLEKGKDLVRKMGDKGCWLGPLTWDPLVKLYVE AGEVEKADSMLHKVVQQNKMKPMFNSYIMIMDQYSKRGDVHNAEKIFFKMRQAGYVARLRQFQALVQTYVNAKLPAYGIRERMKADNIFPSKALAAQLAQ VDAFRRTTVSDLLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	1.7	0.9394
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	2.0	0.9330
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	4.0	0.9061
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10014604 [exp]	5.3	0.9132
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10032072 [exp]	5.5	0.9161
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	7.7	0.9232
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	11.5	0.9006
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	12.2	0.9186
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	14.0	0.9232
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	14.5	0.8985

Compare expression of checked genes

Lus10010430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.