Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54340 747 / 0 ICDH isocitrate dehydrogenase (.1) AT1G65930 738 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT5G14590 679 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT3G09810 57 / 8e-09 IDH-VI isocitrate dehydrogenase VI (.1) AT5G03290 52 / 4e-07 IDH-V isocitrate dehydrogenase V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012111 [exp] 853 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 712 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 708 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10022252 [exp] 605 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 488 / 1e-170 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10026519 [exp] 52 / 3e-07 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 51 / 8e-07 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 49 / 4e-06 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 49 / 5e-06 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080500 [exp] 781 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.010G176000 [exp] 780 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 771 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 769 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 667 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.006G126700 [exp] 50 / 1e-06 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 47 / 1e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010431 pacid=23154064 polypeptide=Lus10010431 locus=Lus10010431.g ID=Lus10010431.BGIv1.0 annot-version=v1.0 ATGTCTTTCCAGAAGATCAGAGTCACCAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGAGTGTTCTGGAAATCGATCAAGGATAAGCTTATAT TCCCCTTCTTGGATCTGGATATCAAGTATTTTGACCTTGGCTTACCAAACCGGGATGCCACAAACGATCAAGTGACCATAGATAGTGCTGAAGCTACTCT TAAGTATAACGTTGCTATCAAGTGTGCAACTATAACTCCAGATGAAGACCGTGTAAAAGAGTTCAACTTGAAAAAAATGTGGAGGAGCCCTAACGGGACA ATTCGGAACATTCTAAATGGTACTGTTTTCAGAGAACCAATCATCTGCAGGAACGTTCCACGTCTTGTCCCAGGTTGGACAAGGCCAATATGCATTGGAA GGCATGCATTTGGTGATCAATACCGAGCAACTGATTTGGTCGTGGGCGAGCCTGGCAAGCTCAAGATGGTGTTTGTGCCTGATGGACACAGCAAAACAAC AGAACTTGAGGTTTTTAAGTTTACTGGAGCTGGAGGTGTAGGTTTGGCCATGTATAACACTGACGAGTCCATTCGTGCTTTTGCGGAGGCTTCGATGAAC ACTGCATACCATAAAAGGTGGCCGCTTTATCTTAGCACGAAAAATACCATCCTCAAGAAGTACGATGGAAGATTTAAAGACATATTTCAGGAAGTTTATG AAAGCAGATGGAAATCCAAGTATGAAGCTGCAAAAATATGGTATGAACATCGCCTTATCGATGATATGGTCGCTTACTCTCTAAAAAGCGACGGAGGGTA TGTCTGGGCGTGCAAGAATTACGATGGAGATGTCCAGAGTGATTTCCTAGCTCAAGGATTTGGTTCTCTTGGCTTGATGACATCAGTATTGGTATGCCCA GATGGTAAAACAATCGAAGCTGAAGCAGCTCATGGCACAGTGACTCGCCATTACCGTGTCCACCAGAAGGGAGGAGAAACGAGCACGAACAGCATTGCGT CCATTTTCGCTTGGTCACGAGGCTTAGCTCACAGGGCAAAGCTGGATGGTAATGCTCGACTTTCGGACTTCACCAAGAAGCTCGAAGCAGCCTGCGTTGG AACTGTCGAATCAGGAAAGATGACCAAGGATCTTGCTCTTCTCATCCATGGACCCAAGGTTACTAGGGCTCAGTACTTGAATACTGAAGAGTTCATTGAT GCAGTAGCAGACCAGCTGAAACAAAGACTAATGGTCAAATCAAAGCTGTAA
AA sequence Show only first row Show all	>Lus10010431 pacid=23154064 polypeptide=Lus10010431 locus=Lus10010431.g ID=Lus10010431.BGIv1.0 annot-version=v1.0 MSFQKIRVTNPIVEMDGDEMTRVFWKSIKDKLIFPFLDLDIKYFDLGLPNRDATNDQVTIDSAEATLKYNVAIKCATITPDEDRVKEFNLKKMWRSPNGT IRNILNGTVFREPIICRNVPRLVPGWTRPICIGRHAFGDQYRATDLVVGEPGKLKMVFVPDGHSKTTELEVFKFTGAGGVGLAMYNTDESIRAFAEASMN TAYHKRWPLYLSTKNTILKKYDGRFKDIFQEVYESRWKSKYEAAKIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLSDFTKKLEAACVGTVESGKMTKDLALLIHGPKVTRAQYLNTEEFID AVADQLKQRLMVKSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	0	1
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	1.7	0.8703
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	2.8	0.8651
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	5.1	0.8112
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	5.7	0.8468
AT1G56423			unknown protein		Lus10029844 [exp]	8.3	0.8518
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	8.4	0.8457
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032605 [exp]	11.2	0.8109
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	11.3	0.8257
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	11.7	0.8400
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	12.0	0.7964

Compare expression of checked genes

Lus10010431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.