Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 214 / 1e-69 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT2G02760 70 / 8e-15 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 69 / 1e-14 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT5G50870 65 / 1e-12 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT1G36340 64 / 1e-12 UBC31 ubiquitin-conjugating enzyme 31 (.1) AT1G16890 63 / 1e-12 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT5G62540 63 / 2e-12 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G78870 63 / 3e-12 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT4G27960 61 / 2e-11 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT2G16740 61 / 2e-11 UBC29 ubiquitin-conjugating enzyme 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012110 [exp] 347 / 4e-122 AT5G05080 260 / 5e-88 ubiquitin-conjugating enzyme 22 (.1.2) Lus10027282 [exp] 259 / 4e-86 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2) Lus10038982 [exp] 252 / 6e-83 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10036727 [exp] 73 / 7e-16 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 73 / 7e-16 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 70 / 1e-14 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 69 / 2e-14 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10017654 [exp] 67 / 1e-13 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 67 / 1e-13 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026900 [exp] 246 / 9e-82 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2) Potri.016G024800 [exp] 229 / 4e-75 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 72 / 2e-15 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 69 / 2e-14 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 69 / 2e-14 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G103400 [exp] 67 / 3e-13 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.006G240900 [exp] 64 / 2e-12 AT5G25760 315 / 2e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.011G111400 [exp] 64 / 2e-12 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 63 / 3e-12 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.018G039200 [exp] 63 / 4e-12 AT5G25760 314 / 5e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10010433 pacid=23154082 polypeptide=Lus10010433 locus=Lus10010433.g ID=Lus10010433.BGIv1.0 annot-version=v1.0 ATGTTGTTTGCAAAAGCTTTGTACTTTACACCGAATGTAAAGATCTGTGTCTACGCAGGTGGGACTCCTTATGAAAACGGCGTCTTTCGTATGAAGCTTC TATTGGCGCATGACTTCCCTCATTCACCTCCCCAAGGGCCTTCTCAATTAACTGTACTTCATGAAACCTTCCGAGCAACAGGTTTCTTCCTGACCAAGAT ATTCCACCCGAACATTTCATCCGATGGAAACATTTGCGTCAATACGCTAAAGAAGGACTGGAATCCAAGTCTCGGGCTAAGACATGTGCTTGTGGTAGTT CGATGCTTGTTGATTGAACCATTCCCTGAATCTGCTCTCAACGAGCAGGCGTCGAAGATGCTGCTTGACAATTACGAGGATTATTTCAAGCATGCAAGAC TTCTCACTGAAATCCACGCGAAACCGAAACCCAAGTCGAAGTCGGGGGCCATTTCCGAGTCTACAACTGCACTGAACGTAGACCAGACTAACACATCGGC TCCTAGTGTGGTCGACCACAAGAACACAGCATTAGCCAGTGCTACATTGCCGTTGGCATTAGAGTTGCCTCCTTGTTCGACCACCTCAAGCGGAGGAAGC AATGTGGATCAGGTAGCTAGACAATCCACCACAGCTGGTGCTGCACCGCTCGTAACAAGCTCTGCAAAGCATGCGATGGGCGTGGTGAAAGCTGCGGCAG AGAAGAAGAAAATGGATGCCAGGAAGAAGAGCTTGAAGAGACTATGA
AA sequence Show only first row Show all	>Lus10010433 pacid=23154082 polypeptide=Lus10010433 locus=Lus10010433.g ID=Lus10010433.BGIv1.0 annot-version=v1.0 MLFAKALYFTPNVKICVYAGGTPYENGVFRMKLLLAHDFPHSPPQGPSQLTVLHETFRATGFFLTKIFHPNISSDGNICVNTLKKDWNPSLGLRHVLVVV RCLLIEPFPESALNEQASKMLLDNYEDYFKHARLLTEIHAKPKPKSKSGAISESTTALNVDQTNTSAPSVVDHKNTALASATLPLALELPPCSTTSSGGS NVDQVARQSTTAGAAPLVTSSAKHAMGVVKAAAEKKKMDARKKSLKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010433 [exp]	0	1
AT3G04780			Protein of unknown function (D...		Lus10001780 [exp]	2.0	0.8725
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	2.8	0.8728
AT1G59600		ZCW7	ZCW7 (.1)		Lus10007745 [exp]	2.8	0.8504
AT5G64180			unknown protein		Lus10008120 [exp]	6.0	0.8568
AT4G32930			unknown protein		Lus10005503 [exp]	9.6	0.8714
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	14.9	0.8437
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	16.5	0.8412
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	21.5	0.8255
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	23.3	0.8413
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	24.4	0.8283

Compare expression of checked genes

Lus10010433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.