Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13810 216 / 6e-68 Restriction endonuclease, type II-like superfamily protein (.1) AT1G67660 155 / 9e-45 Restriction endonuclease, type II-like superfamily protein (.1.2.3) AT3G43810 59 / 2e-10 CAM7 calmodulin 7 (.1) AT5G21274 59 / 2e-10 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 59 / 2e-10 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 59 / 2e-10 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 59 / 2e-10 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT1G66410 58 / 4e-10 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 58 / 4e-10 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT4G14640 50 / 3e-07 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017632 [exp] 417 / 4e-147 AT1G13810 216 / 6e-69 Restriction endonuclease, type II-like superfamily protein (.1) Lus10033589 [exp] 323 / 1e-106 AT1G13810 161 / 4e-45 Restriction endonuclease, type II-like superfamily protein (.1) Lus10012108 [exp] 262 / 2e-88 AT1G13810 113 / 2e-31 Restriction endonuclease, type II-like superfamily protein (.1) Lus10011377 [exp] 89 / 1e-21 AT1G67660 169 / 1e-53 Restriction endonuclease, type II-like superfamily protein (.1.2.3) Lus10006437 [exp] 87 / 8e-21 AT1G67660 172 / 8e-55 Restriction endonuclease, type II-like superfamily protein (.1.2.3) Lus10027283 [exp] 59 / 2e-10 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 59 / 2e-10 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 59 / 2e-10 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10041288 [exp] 59 / 2e-10 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222500 [exp] 337 / 4e-115 AT1G13810 242 / 1e-78 Restriction endonuclease, type II-like superfamily protein (.1) Potri.008G039800 [exp] 191 / 4e-60 AT1G13810 143 / 2e-42 Restriction endonuclease, type II-like superfamily protein (.1) Potri.010G054800 [exp] 174 / 4e-51 AT1G67660 391 / 7e-136 Restriction endonuclease, type II-like superfamily protein (.1.2.3) Potri.016G024700 [exp] 59 / 2e-10 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 59 / 2e-10 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 59 / 2e-10 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 57 / 1e-09 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.012G041000 [exp] 52 / 7e-08 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 51 / 9e-08 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.010G080900 [exp] 49 / 4e-07 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF09588 [flax] [poplar] YqaJ YqaJ-like viral recombinase domain
Representative CDS sequence Show only first row Show all	>Lus10010434 pacid=23154151 polypeptide=Lus10010434 locus=Lus10010434.g ID=Lus10010434.BGIv1.0 annot-version=v1.0 ATGGCGGATCAACTCACCGACGATCAGATCTCCGAGTTCAAGGAAGCCTTCAGCTTATTCGACAAGGACGGCGATGGTTCGTGCACCGTTGATCAAATCG TTTTTAACTATCAAATTGTACGGTACAACACAGCAGCAGATTATATTGATCGTAGCATTGAACAATTTGGTTCTCGTCCTAAAATGTACAATCACTTTTC AGTCGAGGGCCATTCTGGTGCAAAAAGGTTCGATAGCTCTTCATGTGTCTCTCCCCTTAGATTCCGTAAAAGGGAACCTTACTCGGGCCTTGAAACAGCA GGTAGCCTTCAGCACTGGTTCAAAAACTGGCAGGACAAGAGAACACAGAAACTGACTGCAAGTACATTCGGCGGGGCAATCGGGCTATGGCGCCAACGTA GGGTGGAGCTCTGGTTAGAAAAGCTTGGTGCAAAGGAGCCCTTCCCTGGGAACTTAGCAACATGGTGGAACAATATCAAAGAGAAGGAAGCAATCGCAAC TTACAAAAGGATCACTCAGAACGATATCTCCTTCCCTATGTTTCAACTCTACGCGGAGGAGCAGGATGACTGGATAGCAGCTTCACCCGATGGATTGGTT GAGAACATTGTATACGGACTACCTTCAAGAGGAGTTTTGGAGATAAAATGTCCGTACTTTGTCGACATGAGATTGGCGAGGCCTTGGAAACGAGTCCCTC TTTACTTCATCCCGCAGGCTCAGGGTTTAATGGAGATTATGGACAGGGATTGGATGGACTTTTACGTTTGGACCCCAGCAGGGAGTAGCTTGTTCAGGAT TCATAGAGACAGGGAGTACTGGAAAGTGTTGAAGTTGGCTCTTGATGATTTTTGGTTGAAGCATGTCTTGCCCGCTAAGAAACTATGCGAGAAGTACCAG CTTAAGAACCCTTTCATGGAGCTTCCTTTGCTCAGGCCCGCTCCTAGACATCAATACTGCGAGTATATCATCCACGAGAGCAGACGGATCGTTGATGCCT CCCCGCTGTTGCTTTCTGAAATGGGTGGAATCATAATCAGTCCACCCTATGAATGA
AA sequence Show only first row Show all	>Lus10010434 pacid=23154151 polypeptide=Lus10010434 locus=Lus10010434.g ID=Lus10010434.BGIv1.0 annot-version=v1.0 MADQLTDDQISEFKEAFSLFDKDGDGSCTVDQIVFNYQIVRYNTAADYIDRSIEQFGSRPKMYNHFSVEGHSGAKRFDSSSCVSPLRFRKREPYSGLETA GSLQHWFKNWQDKRTQKLTASTFGGAIGLWRQRRVELWLEKLGAKEPFPGNLATWWNNIKEKEAIATYKRITQNDISFPMFQLYAEEQDDWIAASPDGLV ENIVYGLPSRGVLEIKCPYFVDMRLARPWKRVPLYFIPQAQGLMEIMDRDWMDFYVWTPAGSSLFRIHRDREYWKVLKLALDDFWLKHVLPAKKLCEKYQ LKNPFMELPLLRPAPRHQYCEYIIHESRRIVDASPLLLSEMGGIIISPPYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13810			Restriction endonuclease, type...		Lus10010434 [exp]	0	1
AT4G14145			unknown protein		Lus10023526 [exp]	10.9	0.7501
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	33.5	0.7423
AT1G12650			unknown protein		Lus10017837 [exp]	45.4	0.7345
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	47.5	0.6527
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	59.7	0.7176
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Lus10035699 [exp]	61.0	0.7046
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015580 [exp]	65.7	0.7028
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	67.5	0.6429
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	80.4	0.6850
AT1G34770			unknown protein		Lus10033452 [exp]	83.4	0.6802

Compare expression of checked genes

Lus10010434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.