Plant FIBer expression Database

Lus10010435 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G024600
[exp]
85 / 4e-19 AT3G56810 75 / 7e-15 unknown protein
Potri.006G026600
[exp]
79 / 5e-17 AT3G56810 68 / 1e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10010435 pacid=23154143 polypeptide=Lus10010435 locus=Lus10010435.g ID=Lus10010435.BGIv1.0 annot-version=v1.0
ATGAAGCCTGAAGCAGCGGCGTTTCTCAATTCACTCTCCTCCACCGCCTCACCTTCCTCCTCTTCCCGGCGAGAGCACCACGTCGAATCCAATAACCTCG
CCGCCGCCATCGATTCCTCCTCCAAAGACGCCGGATGCATGTCCGGCATCCTCCGCCTCGTCTCCAAGTACCACCCCCGCAACCGCCGACGCCGACGCTT
CCTCACCTTCCGCCGTCCCTCCGCTTCGATCGAACACAATCGGGAGCAAATCAAAACAGCTGGCGCCGATCTACTCGCCTCTACCGCGCACAGGAGCCCC
ACGCTTCCGCCGGAGATCAGACGCTCAACCGAATCGGCAGCGCCTAACGGTGGGGATGGTATTAGCCATTGCGATCGCAGTCGGCAAGCTCTGGTGGCGA
GGCTGATGGGACTGAACGACGACAACGGAGGCGGCGGGGACAGGACCGTGGCGGCGGAGCAGAGGAGGAAGCTGCTCGGTGCGTTGGAGAAATGCGACGA
GGATTTGAAAGTGCTGAAGGAAATGATCGAGGTGGTGACGAAGAGCGGTTACTGCGGCCCGAAATCGAGAGATCAGCCGCCATCGGCCGGAGATTACAGC
TTGTTGGAGGATCCGAGTCGGAGTGCGGTGCTCAGTGAGTTAACTCGTCCACGTCATCATCATCACAAAAGTCACGCTTCTCCTCCCGGTTAG
AA sequence
>Lus10010435 pacid=23154143 polypeptide=Lus10010435 locus=Lus10010435.g ID=Lus10010435.BGIv1.0 annot-version=v1.0
MKPEAAAFLNSLSSTASPSSSSRREHHVESNNLAAAIDSSSKDAGCMSGILRLVSKYHPRNRRRRRFLTFRRPSASIEHNREQIKTAGADLLASTAHRSP
TLPPEIRRSTESAAPNGGDGISHCDRSRQALVARLMGLNDDNGGGGDRTVAAEQRRKLLGALEKCDEDLKVLKEMIEVVTKSGYCGPKSRDQPPSAGDYS
LLEDPSRSAVLSELTRPRHHHHKSHASPPG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010435
[exp]
0 1
AT5G39420 CDC2CAT CDC2C (.1) Lus10030692
[exp]
1.4 0.9084
AT1G62360 HD WAM1, WAM, SHL,... WALDMEISTER 1, WALDMEISTER, SH... Lus10030003
[exp]
5.5 0.8785
AT4G11450 Protein of unknown function (D... Lus10035493
[exp]
6.5 0.8773
AT1G30360 ERD4 early-responsive to dehydratio... Lus10024894
[exp]
6.9 0.8761
AT5G38300 unknown protein Lus10033566
[exp]
6.9 0.8464
AT2G39700 ATHEXPALPHA1.6,... expansin A4 (.1) Lus10016533
[exp]
8.4 0.8432
AT1G62360 HD WAM1, WAM, SHL,... WALDMEISTER 1, WALDMEISTER, SH... Lus10035319
[exp]
9.7 0.8726
AT5G61910 DCD (Development and Cell Deat... Lus10032534
[exp]
10.6 0.8579
AT3G22440 FRIGIDA-like protein (.1) Lus10010560
[exp]
10.8 0.8504
AT1G62360 HD WAM1, WAM, SHL,... WALDMEISTER 1, WALDMEISTER, SH... Lus10035320
[exp]
12.0 0.8530

Lus10010435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.