Plant FIBer expression Database

Lus10010438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56820 197 / 4e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012105
[exp]
345 / 3e-121 AT3G56820 211 / 9e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G026300
[exp]
209 / 4e-68 AT3G56820 208 / 5e-68 unknown protein
PFAM info
Representative CDS sequence
>Lus10010438 pacid=23154099 polypeptide=Lus10010438 locus=Lus10010438.g ID=Lus10010438.BGIv1.0 annot-version=v1.0
ATGGCCAACCCTAGAAGAAGCTCGTACTCCGTCAACATCAACGACGACGGTGCCGGCGCCGGAGTCCAACAATTTTCCTCATCATCATCATCATCTTCTA
CCTCTTCTTTCTTCTCATCATCTCCTCTGTTGATCTCTCTCAAGCACTGGCTGAAGAGGCCGCACGCAGTCCCTTTCTTGCTCTCGGCCTTCCTCCTCCT
CACTTGGCTCTCTCTCCTCCTCCAGCAGCGATCTTCACATTCTTCTTCGTTATCTGCTCGGATCGGAGACGGCCGGAAGTACGACGACGATCGGGATGCG
AATTTGTTCCGGTTTAGATCTGGATCCAGTATCAGGAAGGGCGAACGTGGCTGGCTCCTCGATCCGGTCTCTCTCGCCCATGAACATGGCCTTAAAGGTG
GAGCTGGTTCATGTGCTTCGGTTCATGTGGGAGAAATCCGACCCGGTACACTGAGGGGAAATCATAGACACAATGCTTGCAATGAGACGTTGGTAATTTG
GGGCGCGAAGACGTTGTTCAGGTTGGAGAACCACCAGATTGTAGATACGGGCTATGCAGAAGTGATTGTCGAAGGAGATGAAGTGGCTGTAGCCACCAGT
CCAAGCGGGACAGCTCATGCCCTTGTAAATATCAATTCGCTACAAAGCACGTTCATCATCGGATGCCAAGACTGTATAACTGACCATAGCAGCAGCAGCA
AGAACTCCTCGCATACTGACTACAAAGTTTGGCCCGACCTCTGA
AA sequence
>Lus10010438 pacid=23154099 polypeptide=Lus10010438 locus=Lus10010438.g ID=Lus10010438.BGIv1.0 annot-version=v1.0
MANPRRSSYSVNINDDGAGAGVQQFSSSSSSSSTSSFFSSSPLLISLKHWLKRPHAVPFLLSAFLLLTWLSLLLQQRSSHSSSLSARIGDGRKYDDDRDA
NLFRFRSGSSIRKGERGWLLDPVSLAHEHGLKGGAGSCASVHVGEIRPGTLRGNHRHNACNETLVIWGAKTLFRLENHQIVDTGYAEVIVEGDEVAVATS
PSGTAHALVNINSLQSTFIIGCQDCITDHSSSSKNSSHTDYKVWPDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56820 unknown protein Lus10010438
[exp]
0 1
AT1G04360 RING/U-box superfamily protein... Lus10021197
[exp]
12.9 0.8699
AT1G08650 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylas... Lus10014657
[exp]
17.3 0.8477
AT3G56820 unknown protein Lus10012105
[exp]
17.5 0.8539
AT5G54800 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHAT... Lus10043060
[exp]
27.0 0.8678
AT1G51680 AT4CL1, 4CL.1, ... ARABIDOPSIS THALIANA 4-COUMARA... Lus10008677
[exp]
31.8 0.8627
AT5G54800 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHAT... Lus10011155
[exp]
36.7 0.8601
AT1G65270 unknown protein Lus10020224
[exp]
38.5 0.8077
AT4G18593 dual specificity protein phosp... Lus10022402
[exp]
38.6 0.8404
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Lus10013604
[exp]
47.9 0.8579
AT5G07740 actin binding (.1) Lus10017556
[exp]
50.2 0.8376

Lus10010438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.