Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56640 1180 / 0 SEC15A exocyst complex component sec15A (.1) AT4G02350 742 / 0 SEC15B exocyst complex component sec15B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027288 [exp] 1329 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10038993 [exp] 1323 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10009856 [exp] 458 / 2e-152 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10010296 [exp] 385 / 1e-127 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10010295 [exp] 315 / 6e-100 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1) Lus10009857 [exp] 59 / 2e-10 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032100 [exp] 1246 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 1231 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1) Potri.002G203200 [exp] 780 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 780 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04091 [flax] [poplar] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Lus10010439 pacid=23154087 polypeptide=Lus10010439 locus=Lus10010439.g ID=Lus10010439.BGIv1.0 annot-version=v1.0 ATGGAAGCAAAACCAAAGAGGAGAGCTGTGGTGGACAATGGGGACACAGGGGAGGACCTAGTCCTCGCAACCCTAATCGGCAATGGGGACGATCTGGGAC CCATCGTCAGGCACGCCTTTGAAATGGGGCGTCCAGAGTCCCTCATGCATCAGCTAAAATTGGTCGTGAAGAAGAAGGAAGTCGAGATCGAGGAGCTCTG CAAGAGCCATTACGAAGAGTTCATCTTGGCAGTCGACGAGCTTCGTGGTGTCCTGGTCGATGCCGAGGAGCTCAAGGGTGAGCTTGCTAGTGACAACTTC AAGCTCCAGGAAGTTGGGAGCTCTCTCTTGATCAAGCTTGAGGACCTCCTCGAATCCTACTCGATCAAGAGGAACGTCACCGAGGCCATCAAGATGTCCA GAGCTTGCGTACAGGTACTAGAGCTGTGTGTCAAGTGCAACAATCACATGACGGATGGCCAATTCTATCCGGCATTGAAGACGGTAGACCTGGTAGAGAA GAAGTACCTAAAGAACATTCCGGTAAGGTCGTTGAAATCGGCGGTGGAGAAGACGATTCCGGTCATCAAATCGCACGTCGAGAAGAAAGTAACTAGCCAG TTCAACGAGATGTTGTTTCACGTGAGGAGCTCCGCGAAAACAATCGGACAAACCGCGATAAGCCAGTCTGCATCGGCACGACAGAGGGACGAGGAGATGC TCGAACGGCAGAGGAGAGCCGAGGAGCAGCAGAGCGGCTCCGGCTTCGGAGACTATGTGTTCACTCTCGACCAAGACGAGGGGGACGAGGATTCGGTACT GCAGTTCGATCTCACTCCTCTATACCGCGCGTATCACATCCATTCGTGCCTCGGCCTGCAGGACCAGTTCTGCGAATATTACTACCGGAACCGCGTCCTT CAACTAAATTCAGACCTGCAGATATTTTATGGTCAGCCGTTTATCGAGTCGTACCAGACCTACCTGGCCCAAATCGCGGGATACTTCATCGTCGAGGATC GCGTTCTCAGAACAGGAAACGGCGTCCTATCGTCCGATCAAGTTGAAACAATGTGGGAAACCGCGGTCAACAAAGTGACATCCCTTATCGACCACCAATT CAACAGCCACTCAGATTCCGCTACCCATCTCTTGTTGGTAAAAGACTACGTTACCCTCCTAGCGGACACACTACAACAATACGGCTACGACACATCGAAA ATACTCGTGGCCCTCGACAAAGGCGGCGAGAAGTACCACAAACTTCTCGTCCACGAGTGTCGGGAGCAGATCGTCGACGCCCTGGGGAACGACACGTACG AGCAGATGGTGATCAAGAAGGACTCCGATTACGAGAACAACGTGCTCATTTTCCAGCTCCAGACTTCCGAAATCATGCCAGCTTTTCCGTACATTGCGCC GTTTTCGGCCATGGTGCCCGACATTTGCCGGATCGTGAGGTCGTTCATTAAAGGATCAGTTGATTACCTGTCGTACGGGCTCCATACGAACATCTACGAC ATTGTGAGGAAGTACCTGGATAACCTCTTGATCGATGTTCTGAACGAGGTCGTGCTCAACACGATCCATAGTAGCGCGATCGGGGTTTCCCAAGCGATGC AGATCGCAGCGAACATGACGGTCTGCGAGAGAGCTTGTGATTTCTTCCTTCGACACACGGCTCAGCTGTGTGGGGTCCCCTCGCGATCGATCGACCGTGT TCAAGGTGGCGCGAATCTAACGGCTAAGGTTGTCCTCAAGACTTCGCGGGACGCAGCTTACATCGCCCTGCTGACCCTAGTCAACAACAAGCTCGACGAG TTCATGTCCCTAACCGATAACATAAACTGGATCGCCGAGGAGGCGCCACAGGGCGGAAACGAGTACATAAACGAGGTGTTGATCTACCTCGACACGCTCC TATCGACAGCGCAGCAGATCCTCCCGATCGACGCCCTCTACAAGGTCGGGTGCGGAGCGATGGAGCACATCTCAAACTCCATCGTCGCAGCGTTCCTCAG TGACATCGTGAAGAGGTTCAGCGCGAACGCGGTGGCCTCACTCAACTACGACCTCAAGATGGTCGAGAATTTTGCTGAGGAAAGGTTCCATGCGACCGGC CTGAGCGAGGCATACCGGGGTGCCTGCAGCTTCAGGGGCTGTTTGGTGGAGGCGCGACAGCTGATCAATCTGTTGTCGAGTAGCCAGCCGGAGAACTTCA TGAACCCTGTAATTAGGGAGAGGAGCTACAACGCTCTGGATTATAAGAAGGTGGCTACGATATGTGAGAAGTTTAAGGACTCAGCTGACTCGATTTTCGG CAGCCTTTCGAACCGGAACGCTAAGCAGAGTGCTAAGAAGAAGTCCATGGAGGTTCTCAAGAAGAGATTGAAGGACTTCAATTGA
AA sequence Show only first row Show all	>Lus10010439 pacid=23154087 polypeptide=Lus10010439 locus=Lus10010439.g ID=Lus10010439.BGIv1.0 annot-version=v1.0 MEAKPKRRAVVDNGDTGEDLVLATLIGNGDDLGPIVRHAFEMGRPESLMHQLKLVVKKKEVEIEELCKSHYEEFILAVDELRGVLVDAEELKGELASDNF KLQEVGSSLLIKLEDLLESYSIKRNVTEAIKMSRACVQVLELCVKCNNHMTDGQFYPALKTVDLVEKKYLKNIPVRSLKSAVEKTIPVIKSHVEKKVTSQ FNEMLFHVRSSAKTIGQTAISQSASARQRDEEMLERQRRAEEQQSGSGFGDYVFTLDQDEGDEDSVLQFDLTPLYRAYHIHSCLGLQDQFCEYYYRNRVL QLNSDLQIFYGQPFIESYQTYLAQIAGYFIVEDRVLRTGNGVLSSDQVETMWETAVNKVTSLIDHQFNSHSDSATHLLLVKDYVTLLADTLQQYGYDTSK ILVALDKGGEKYHKLLVHECREQIVDALGNDTYEQMVIKKDSDYENNVLIFQLQTSEIMPAFPYIAPFSAMVPDICRIVRSFIKGSVDYLSYGLHTNIYD IVRKYLDNLLIDVLNEVVLNTIHSSAIGVSQAMQIAANMTVCERACDFFLRHTAQLCGVPSRSIDRVQGGANLTAKVVLKTSRDAAYIALLTLVNNKLDE FMSLTDNINWIAEEAPQGGNEYINEVLIYLDTLLSTAQQILPIDALYKVGCGAMEHISNSIVAAFLSDIVKRFSANAVASLNYDLKMVENFAEERFHATG LSEAYRGACSFRGCLVEARQLINLLSSSQPENFMNPVIRERSYNALDYKKVATICEKFKDSADSIFGSLSNRNAKQSAKKKSMEVLKKRLKDFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10010439 [exp]	0	1
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	8.0	0.8108
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	10.9	0.7841
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	15.3	0.8105
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	15.7	0.8102
					Lus10025164 [exp]	20.7	0.8022
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	23.5	0.7538
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10040113 [exp]	27.1	0.7795
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	29.0	0.7547
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	33.2	0.8017
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	33.8	0.7871

Compare expression of checked genes

Lus10010439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.