Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 382 / 1e-122 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 274 / 1e-82 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT3G10800 263 / 5e-78 bZIP BZIP28 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G11260 53 / 7e-08 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 47 / 3e-06 bZIP HYH HY5-homolog (.1.2.3.4) AT1G06850 47 / 3e-05 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 45 / 0.0001 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 44 / 0.0003 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06070 44 / 0.0004 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G58120 43 / 0.0006 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012104 [exp] 1093 / 0 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 525 / 7e-178 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 507 / 6e-171 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 50 / 1e-06 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 49 / 2e-06 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008150 [exp] 47 / 2e-05 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019376 [exp] 46 / 8e-05 AT1G06070 384 / 6e-131 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 46 / 0.0001 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009907 [exp] 45 / 0.0001 AT1G06850 270 / 2e-89 basic leucine-zipper 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 435 / 1e-142 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 427 / 4e-139 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 54 / 5e-08 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 50 / 7e-07 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 51 / 1e-06 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 50 / 1e-06 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.015G047700 [exp] 48 / 8e-06 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.005G257900 [exp] 46 / 4e-05 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.013G156900 [exp] 46 / 7e-05 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 46 / 7e-05 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10010440 pacid=23154125 polypeptide=Lus10010440 locus=Lus10010440.g ID=Lus10010440.BGIv1.0 annot-version=v1.0 ATGGCTGATTCCGCCGTCGATCCAGTCGGCTTCTTCACCTCCGATCACGACGTAGGAGGTGGATTGGCCTCCGATCTAAATTCCTTCAATTTCGACGAGA ATTTCGACATCGGTATCGACTTCGACGACCTAGACTCCCTCTACTTCCCTTCCGAGACCGAGTCCTTCGTTCTCCCTGACTCATCCCCCGCCGGATCGCC GAACAATGACATTGCTGCCGCTGCTGCGGAGTCGGGGAATTCAGGAGTTTCAGGCGACGTCGTCGGGAAGTACTTCAACTGCGACTCCGACGAAGGGAGC ACCGCGATGGCGGCGGCGAATCGTCGCGTGGATTCGTCTCCGGCGTCGTCTCACGGATCTGGCAACGGGAGGTCGACGGTTTCCGATACGGAGGCGGCGT GTTGTTCTCCTGATTCGGGGAGTAGCGAGAAGAAGCAGAAGAATGTTGTTAAGGATGAAGGGGAAGGGAATGCAAAGAGGAAGAAGGAAGCTGGGAATGG GGAGCAATTGAGGAGGCAGAAATGCAGGGTGTTGGAGTTTCCGAGCTCGGTTTCGAAAGAGAGCGACGATTCAAAGGCTGAGTCCGGAAGCGTGGGGCAG CAGTTTGGTGGAGAAGATGAGAAGAAGAAGGCGAGGCTGATGAGGAACAGGGAGAGTGCTCAGCTGTCGAGGCAGAGGAAGAAGCATTACGTGGAAGAGC TGGAGGATAAGGTGCGAGCTATGCATTCTACTATAACTGATTTGAATGGGAAGATATCGTATTTCATGGCTGAGAATGCTAGCTTGAGACACCAATTAGG GGGTGGAAATGGAGGGATGTGTCCTCCTCCCGGTATGTATCCACCTCCGATGACACCAATGCCGTATCCATGGATGCCCTGTGCTCCTTATGTGGTTAAG CCTCAGGGTTCTCAGGTGCCATTGGTTCCGATTCCTAGGTTGAAACCTCAGCATCAGCAGCCGGCCATGGCGAAATCGAAGAAGGGTACTGGGGAGGGGA GGAAGTCTGAAACCAGGACTAAGAAAGTTGCTAGTGTTAGTTTTCTAGGGCTGCTGTTCTTCGTTTTGATGTTTGGTGGGTTAGTGCCGCTAGTTAATGT TAAGTATGGAGGGGTAAGTGATAGTAATGTCGCTGTGAACGGTTGGTTTTCTGATCAGAATTTCCATGGGAAAGTGTTGGTAGTTGATGGACATAGTAAT AGAACCAGTGGGAGCATCAATGGTGGTATGCACTGTGAGAAAGGAGTGAAAGGTCGTCTAGAATGTGATAAGTCGAGGGAGGGAGGTCCCGAGAATGTAC CGAAAGGAAGTGGCTTTACGAGTACTGATAACTCGACTGAACAGCTTCATGCTTCTCTGTATGTGCCGAGGAATGATAAGCTTGTGAAGATTGATGGGAA CTTGATAATTCACTCTGTCCTGGCTAGCGAGAAAACAAAGCGATCCCATGCCAGTGCCACTACCGAGTCGAAACCTAAGGAAACGAGTCTAGCAGTGTCG AAGTATCTTTCTGCCGCTTTAGCTATCCCTGATGGAACCACAAGGAGGAGGCTGTACAGGACTACTGCTGAGCAGCAGAAAGCAATTGGCGGCCGTTCCC GGTCAGCTGATAATTTGAAAGAGCAGTTCAAGTCTTCTGCCGCTGATGGTAAACTGCAGCAGTGGTTCCACCAAGGTCTTGCTGGGCCAATGCTGAGTTC GGGAGTGTGCAGCGAAGTGTTCCAGTTTGACGTATCCCCATCTCCAGGCGCCATAGTTACAGCTTCCTCAGTAACCAATCTCACCAACAAACCCCATAAT GCGACTACTAGTGCTCCTCCTTCCGACAAGAAGAAGCACAGGAGGATCCTCCACGGCCTCCCGGTACCCTTGTCGACATCTGATCTCAACGTTACCGGAG ACCAACACCACCGCAAAGGAGGACAGAAGAACGAGACTTCGTACAATCCGGCAGCAGCCTCTTCTTCGATGGTCGTATCCGTGCTCGTGGATCCACGAGA AGTCGGGGACAGCGACATGGTTGCACCGAAGAAGTCGCTGTCGCGAGTCTTTGTAGTTGTGCTAGTGGACAGTGTCAAGTACGTTACATACTCGTGCGTG CTTCCACGATCTGGTCCTCACTTGGTAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10010440 pacid=23154125 polypeptide=Lus10010440 locus=Lus10010440.g ID=Lus10010440.BGIv1.0 annot-version=v1.0 MADSAVDPVGFFTSDHDVGGGLASDLNSFNFDENFDIGIDFDDLDSLYFPSETESFVLPDSSPAGSPNNDIAAAAAESGNSGVSGDVVGKYFNCDSDEGS TAMAAANRRVDSSPASSHGSGNGRSTVSDTEAACCSPDSGSSEKKQKNVVKDEGEGNAKRKKEAGNGEQLRRQKCRVLEFPSSVSKESDDSKAESGSVGQ QFGGEDEKKKARLMRNRESAQLSRQRKKHYVEELEDKVRAMHSTITDLNGKISYFMAENASLRHQLGGGNGGMCPPPGMYPPPMTPMPYPWMPCAPYVVK PQGSQVPLVPIPRLKPQHQQPAMAKSKKGTGEGRKSETRTKKVASVSFLGLLFFVLMFGGLVPLVNVKYGGVSDSNVAVNGWFSDQNFHGKVLVVDGHSN RTSGSINGGMHCEKGVKGRLECDKSREGGPENVPKGSGFTSTDNSTEQLHASLYVPRNDKLVKIDGNLIIHSVLASEKTKRSHASATTESKPKETSLAVS KYLSAALAIPDGTTRRRLYRTTAEQQKAIGGRSRSADNLKEQFKSSAADGKLQQWFHQGLAGPMLSSGVCSEVFQFDVSPSPGAIVTASSVTNLTNKPHN ATTSAPPSDKKKHRRILHGLPVPLSTSDLNVTGDQHHRKGGQKNETSYNPAAASSSMVVSVLVDPREVGDSDMVAPKKSLSRVFVVVLVDSVKYVTYSCV LPRSGPHLVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	0	1
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	4.5	0.7863
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	5.5	0.8077
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	7.3	0.7970
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	7.4	0.7836
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	11.4	0.8127
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10032450 [exp]	16.6	0.7961
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	18.5	0.7868
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	20.2	0.7704
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	21.0	0.7908
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	27.0	0.7957

Compare expression of checked genes

Lus10010440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.