Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10180 1106 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 467 / 1e-148 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39050 334 / 4e-97 Kinesin motor family protein (.1) AT2G21380 333 / 7e-97 Kinesin motor family protein (.1) AT3G12020 329 / 3e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G21730 322 / 3e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G06670 319 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18370 287 / 2e-81 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 280 / 3e-79 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT2G21300 271 / 2e-76 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012103 [exp] 1916 / 0 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007725 [exp] 464 / 8e-147 AT1G59540 906 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018661 [exp] 457 / 3e-144 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041958 [exp] 338 / 4e-99 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 338 / 2e-98 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10018145 [exp] 327 / 6e-94 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 325 / 2e-93 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015448 [exp] 301 / 7e-91 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 305 / 2e-87 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040700 [exp] 1334 / 0 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 461 / 5e-146 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 347 / 2e-101 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 342 / 5e-100 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G194900 [exp] 325 / 3e-94 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G060400 [exp] 324 / 6e-94 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 319 / 3e-91 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G136600 [exp] 294 / 6e-84 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 293 / 9e-84 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 291 / 1e-82 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10010441 pacid=23154086 polypeptide=Lus10010441 locus=Lus10010441.g ID=Lus10010441.BGIv1.0 annot-version=v1.0 ATGGAGCGCATTCACGTCACAGTTCGAGCAAGGCCACTCTCGCCGGAGGACGCTAAGGCCAGCCCCTGGCGAGTTTCTGGCAACTCCATCTTCATCCCTA ACCACAGCACCAAGTTCGAGTTCGACCGGGTGTTCGGAGAAGACTCCAAGACCGAGGAGATCTACAGAGCGCGGACTAGGGATATCGTTGCTGCAGCTAT TCGCGGATTCAACGGTACTGTATTCGCTTATGGACAAACAAACAGCGGGAAGACGCATACAATGCGAGGATCATCGGCTGAGCTAGGTGTCATCCCACTT GCTGTGCATGATGTTTTTAACATAATACATGAGGATGTGAGTCGAGAATTTCTCCTACGGATGTCATATTTGGAGATCTACAATGAGGATATAAACGACT TGCTTGCACCTGAGCACCGAAAGCTGCAGATTCATGAAAATCTGGAGCGTGGAATATATGTTGCTGGTTTGAGAGAAGAGATTGTTACATCTCCGCAGCA AGTCCTTGATCTCATGCAATTTGGAGAAGCACATAGGCATATTGGTGAAACAAATATGAACACATACAGCAGTAGGTCTCACACTATCTTCCGCATGATA ATTGAGAGTCGGGATAGAACTAAGGATGAAGATATGGGTAATGCTTGTGATGCTGTACGCGTATCAGTCTTGAATTTGGTGGACCTTGCTGGTTCAGAAC GTGCTGCAAAAACTGGCGCTGAAGGTGTTCGCCTCAAAGAAGGTTCGCACATCAATAAGAGCCTTATGACGCTGGGAACTGTGATAAAAAAACTGAGTGA GGGTGCTGAAAGCCAAGGGGGTCATGTTCCTTATCGAGATAGTAAACTTACGCGGATTTTACAACCAGCTTTAGGAGGCAATGCAAATACAGCAATAATA TGCAATATTACTCTCGCTCAGATTCATGCAGATGAAACAAAAAGTAGTCTTCAGTTTTCGAGCAGGGCATTACGGATTAAAAATTGTGCTTGTGTGAATG AGGTGTTGACTGATGCTGCCCTCTTAAAGCGTCAGAAGAAGGAAATTGAGGAACTGAGAGCAAAATTGATGGGTACTCACTCGGAGCACCAGGAAGATGA GATTCTCAGTCTACGAAACACATTATTACAGTCAGAACTGGAAAGAGAACGGGTAACTCTTGAACTGGAAGAGGAAAAAAGAGTCCAAGCTGAGCGCGAA AAGCTTTTGCAAGAGCAAGCGAAGAAAATTGAAAGCCTGTCATCCATGGTTCTCTATTCCAATCGAGACGATAACTGCAACCAGCTTAAGAAGGGAAAAA GACGGGACACATGGTGTCCAAGTAATTTTTCAAGAGTAGCACTGCAAGAGGTGGATGCTAATTCGCAATCAAGGCTGTCTACTGTCAAGCCCATGAGAGG TAGAAGTGATGTGGGACAGCTTGTTTCTTTTGAAGAATTAGTAAGTGAAGAAACGGTTGCCGATGACCTCTCTCAGCCACAATCAGCACCTAGAAATAGT GCATCAGAGGACTGCACTCTTCCTGATCCATGTGCTTTGCTGCATGTTACCAACAGGAGGAAGGGGCAGTCAAGAAAGAAATCCTCTGTTTCGGAGGACC ATGGTTTGAGTGAAATTCAAGAGGAGTACGAGGAGTTACTCCTGGAATCTGAAACTCAGAGAACTGTGAGTGAGGTTCTGATAGATTGCTTGAGAAGACA GCTGGTTGACAGAGATAATTCACTCACTAGGATGCAGAGCGACCTTGCCTTTCCTCATGACCACGAGTCTGGAAATCTTAAGGAGAAGAGTATAAGTATC AGGGAGTCGGAGGCCATTCTTATAATTAAGCAGCTACGAGAAAAGATTGAGATGTTAGAGATGGATAAAAATTCAAGTCAACAAAATCTGGACAGCGTTG TCGATCTAGCGACAGAGCAAAGTCTTTACGCAAGGGAGAAGTTTGAAGAGCTACATCAAGAGCTTGACAAGGCCAGAGAAGAGGCTAGGGTTGCTTCTGA ACAGCTTGATGCAGGAATGAGTGATCTTCGAATGGAGATTGAAGAACTATCAAGTGAAGTTGAGGAAGCAAACATTGTCGTCCAGACTGCGTTTTCACTT TTAGAAGAATCTTTCCTGAGTTTCTCAATGATCTCTGATGTGTTTAGCGACTTCAGGAAGTCAATGCTCGAGAATTCTGACAAACAAAACTCAATCATTG GTGACCTTGCTGAACTGTGTGACTGTGTCAGGCAGAAGCTCACAGTAGCCGAAAATGAGAAGCTTTTACTGACCGATAAATGTGCTGATCTCGAGAGACA TCTACAAGAAGTGAGGCAGGATGCTCAAAAGCAGGAAGATGCCCTGGCAGCACTTTCAGAAGATGTGAATTATGAAAAGGAAGAATACATCTCACGGATT CTGAATCTCGAAAAGGAAGTATCTAATTTATCTTCATGTTCCTTGGCAAAGGAGAAGGAAAGCTTGAGAAAAGACCTTGAGAAAATAAGAGCGAGGCTGA AAGAGATTGAATCCAAACTGAAGAATGTGGTTCAAGAGAAAACGAAACTTGAGGGAGAGAAAGTGCTTGCTGAGAAAGAGGTAAAGCGATTGCATGGTCA AAAGAATATGCTTCAGCGAGACATTAGCAAGCGTGATTCTGTTATGGAGAGGAGTTCTAAAGTCGGCGACCCAAGAAAGGCGAAGGATCCAACGATTTCA TTTGACAAGACAATGCAAGAAGACTACAGAAAACTTGAAGTCCTTGCATTTGAGATGGAAGAAGCTATTGCTTCCCTAGAGGAGGAACTTGAAGAAGTAC GTAATGAAAAGGAAATGATAACACAGAGAAGTGAAAATCTCGCATCCGAGTTAGTAACCATGTCCGAGAGGTTCGATGCTTCTAATGCTGAGTTGTGCTC GCTGCAACAAGAGATTCTGGGGCTTAGACTAAAGTTGGAAGCGTCTACTTCTGATCAGCAAGAAATGGAGAACTCCATCAAGCTCTTGCTACAAGAAAAG GAAGACTTGGCGCTGCAACTCAGTAATTCCCTTCTCGAAATGGAGGAGGAAAAGGCGATTTGGTTTTCGAAAGAGAAAGCGTCGCTTGCAGCCATTGAAG CGAAAAGAAAATTACACAATGAGGAAATCACCACATTGTACAAAGCACTGTCAGAAGTACAAGGCGAACTGGAATCCTGCCAAGAAGAATACAAGGTCCT CAAGGAAACATTGTTGAAGAAGGAAGATGAACTAGCGGAGAAATGCAGTGAATTGTCTCGAGATCACGACGAGAGAAGATCAAACATTGAGAGCGACAGA CACAAAGTGGACTACACCGCAACGGTCAACGAGAAGACTAAATTGAGAATGATTGCGAGGGGGACGCAAGCGAAACAGAAGGCATTTGGTTTCAGGTACA GAGAAGCCGTTAGGGAGTTGGAAGTTATGCACAAGAAATTCGAAGAGGCTTCGAAGAAGCTTAAAGAGAAGTTGGCATTCTATGTGAAGGAAAACCTGGA ACTGAAAAAACAACAATTAATTTCCTCTTCCTCTGTATAA
AA sequence Show only first row Show all	>Lus10010441 pacid=23154086 polypeptide=Lus10010441 locus=Lus10010441.g ID=Lus10010441.BGIv1.0 annot-version=v1.0 MERIHVTVRARPLSPEDAKASPWRVSGNSIFIPNHSTKFEFDRVFGEDSKTEEIYRARTRDIVAAAIRGFNGTVFAYGQTNSGKTHTMRGSSAELGVIPL AVHDVFNIIHEDVSREFLLRMSYLEIYNEDINDLLAPEHRKLQIHENLERGIYVAGLREEIVTSPQQVLDLMQFGEAHRHIGETNMNTYSSRSHTIFRMI IESRDRTKDEDMGNACDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPALGGNANTAII CNITLAQIHADETKSSLQFSSRALRIKNCACVNEVLTDAALLKRQKKEIEELRAKLMGTHSEHQEDEILSLRNTLLQSELERERVTLELEEEKRVQAERE KLLQEQAKKIESLSSMVLYSNRDDNCNQLKKGKRRDTWCPSNFSRVALQEVDANSQSRLSTVKPMRGRSDVGQLVSFEELVSEETVADDLSQPQSAPRNS ASEDCTLPDPCALLHVTNRRKGQSRKKSSVSEDHGLSEIQEEYEELLLESETQRTVSEVLIDCLRRQLVDRDNSLTRMQSDLAFPHDHESGNLKEKSISI RESEAILIIKQLREKIEMLEMDKNSSQQNLDSVVDLATEQSLYAREKFEELHQELDKAREEARVASEQLDAGMSDLRMEIEELSSEVEEANIVVQTAFSL LEESFLSFSMISDVFSDFRKSMLENSDKQNSIIGDLAELCDCVRQKLTVAENEKLLLTDKCADLERHLQEVRQDAQKQEDALAALSEDVNYEKEEYISRI LNLEKEVSNLSSCSLAKEKESLRKDLEKIRARLKEIESKLKNVVQEKTKLEGEKVLAEKEVKRLHGQKNMLQRDISKRDSVMERSSKVGDPRKAKDPTIS FDKTMQEDYRKLEVLAFEMEEAIASLEEELEEVRNEKEMITQRSENLASELVTMSERFDASNAELCSLQQEILGLRLKLEASTSDQQEMENSIKLLLQEK EDLALQLSNSLLEMEEEKAIWFSKEKASLAAIEAKRKLHNEEITTLYKALSEVQGELESCQEEYKVLKETLLKKEDELAEKCSELSRDHDERRSNIESDR HKVDYTATVNEKTKLRMIARGTQAKQKAFGFRYREAVRELEVMHKKFEEASKKLKEKLAFYVKENLELKKQQLISSSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	0	1
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	2.6	0.9568
AT1G20060			ATP binding microtubule motor ...		Lus10033133 [exp]	4.7	0.9562
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	5.5	0.9506
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	5.6	0.9186
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	7.2	0.9507
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	9.5	0.9377
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	9.5	0.9300
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	11.0	0.9543
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	11.0	0.9234
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	11.5	0.9477

Compare expression of checked genes

Lus10010441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.