Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 477 / 6e-156 HERK1 hercules receptor kinase 1 (.1) AT2G23200 477 / 7e-156 Protein kinase superfamily protein (.1) AT5G59700 470 / 2e-153 Protein kinase superfamily protein (.1) AT5G61350 448 / 1e-144 Protein kinase superfamily protein (.1) AT4G39110 445 / 3e-143 Malectin/receptor-like protein kinase family protein (.1) AT5G24010 442 / 9e-143 Protein kinase superfamily protein (.1) AT2G21480 441 / 7e-142 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 441 / 1e-141 THE1 THESEUS1, protein kinase family protein (.1) AT5G28680 430 / 1e-137 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT2G39360 429 / 1e-137 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012101 [exp] 1255 / 0 AT2G23200 494 / 2e-162 Protein kinase superfamily protein (.1) Lus10028140 [exp] 471 / 1e-153 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 466 / 1e-151 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 460 / 2e-149 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 451 / 4e-146 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 435 / 2e-139 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 431 / 1e-137 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 426 / 1e-135 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 426 / 2e-135 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144100 [exp] 630 / 0 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143700 [exp] 630 / 0 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144200 [exp] 608 / 0 AT5G24010 558 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143200 [exp] 511 / 6e-169 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 480 / 5e-157 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 474 / 1e-154 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 467 / 4e-152 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.004G079700 [exp] 462 / 1e-150 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 464 / 2e-150 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 460 / 4e-149 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10010443 pacid=23154160 polypeptide=Lus10010443 locus=Lus10010443.g ID=Lus10010443.BGIv1.0 annot-version=v1.0 ATGGAGAAACCCAACTCTAACTGCTACACTCTTCTCTATCTCCTCCCCATCTACCTCCAATTCCTCTGTTTCTTCTCACTTCCTTCCTCCTCCGTCGCCG CCGATTCTTCTACAAACCGTCTCCGCATAAACTGCGGCTCCGCCTCCACCGTTGACGACGCCAACTATGGAACCTTCACCGGCGACAAATCTCACAAATT CTTCCGCATCAGTGAAGGCAGCAATACGGCTACGGCTACTCCAGCAGGAACGAACAATTCTCTGTACCAAACGGCCAGAATCTTCTCACAACCGAGTCGC TACACATTGGAGGTGGCTCCTAACTCCCCGTATTATCTCCTCCGCCTCCATTTCGCCGCCTTCTATACTCAAAGCGCCAACCTCTACGCCGCCGTCTTCC ACGTCTCCACTTCCAGTAAAGCACTCCTACGCAACTTCTCCACACCAAATTCGACGGTGTTGGTTTCAGAATTCTACGTCCCCGTCGCCAATTCATCGGA ATTTCGGATCTATTTCATCCCAGCTGAAACAAATACCTCATCCTCGTCGTTGTCGTCTCCTCTGGCTTTTGTGAACGCCATCGAGTTCCTCCGTCTCCCC GACGCCAACTTGTTCGCCCACCATTCTCAGAGCCAGGCTTTCCACACTCTTTACCGAGTCGATGTCGGCGGCGGCGGCGGTCAAGATGATAACGAAAACT CCTTGCGGCGGCAATGGAGTCCGGACAAGGACTATTATGCAACTCCTTCCGTCGGTACGAGCAGAAATAAATCGATGGGGGCTCGACCAGCCTACGATGA AGACCTCGCTCCACTCTTCATCTTGAGGAGCTGCAGATCTGAGACCTCGGAGATTAACGGACCGAATCCCTCGAACTTAACCTGGAGATTTCAAGTGAAG AGGAACAGTAAGCAATTCGTTCGCCTCTACTTTTTCAATTGCGTCGGCAGCTCACCTGAAGAATTCAATATCTACATCAACGATTTCAAGGAGCCTAGGG ATGACGTCTTCACGGACCCGCAGCGCCAAGAATATGTGGTGGATTCCGGTGGCTCCGAATACGTGAACATCAGCATCAGCCCTCAAAAGGCTGAAGATAT GAAAAAAAGCGCTTATCTGAGTGCTCTGGAAATAATGGAGTTTCTACCAAACACGACAGTAAACGACTCGGATATTCACGACGAAAACCTTACTTATTTC CCTCGGAATCTCGTGATTGGGCTTTCCGTTGCTGGGGGATTGGTAATCGCTCTGATTTTGTCGATCGTGTTTGTGCTGAGGTTCCGGCGGAGGAGGAAGA AGAAGAAGAATTCGTCTGATTCTAAATCGAAATCGAAATCTTCAACCGCCGCCAGTGGGAAGAAGTTCCACAGCTGGATGACGGTGAATAATAATACCAA TAGCCAAGGCTCGCCTCTCCCGGAGCTGAATCTAAAGCTCAAGATGCCATTAGCTGAAATCCTAGCTGCAACCGACAATTTCAACCCGGAGAGATTGATC GGTTCGGGCGGGTTCGGTAAAGTATACGAAGGAAAGCTTGTGAGTACCGGCGTGAAAGTCGCAGTGAAGAGAAGCGAAGAATCTGGTCATGGACAAGGCC TACCCGAATTCCACACAGAAGTTCTAGTCCTCTCCAAGATCCGCCATAGACATTTGGTTTCCTTGATCGGATATTGCGACGACGAAGATGAGATGATTCT TGTATACGAGTTCATGAAGAACGGAACTCTCAGGGAATATCTGTACACCTCGGAACACGAACCTCCTCCGCCATTGTTGAATTGGAAGCAGAGGCTTGAG ATCTGCATAGGATCGGCAACAGGTCTGCACTACCTTCACACAGGATCGGACGGAGGGATCATCCACAGAGATGTGAAGACTACAAACATATTACTGGACG ATAACTTGGTAGCGAAAGTGGCGGATTTCGGGCTATCACAATCCGGTCCACCCGATCCGGATCACCATACCATGGCGTTAAAAGGAAGCTTCGGTTATCT CGATCCGGAATTCTTCAGGACGCTTCAGTTGACTGACAAATCCGACGTGTACTCGTTCGGAGTGGTGATGCTGGAAGTGCTCTGCGCCAGGCCTCCGATT GTGAACTCATCAAACGCCGAGGAGATCAACTTGGCGGAGTGGGGGTTGGCGTGGCAGAAGAAAGGGGAGATCGAGAAGATCGTTGATCCGTTGATTGCCG GGGAGATAAATCCGAGTTCGTTGAGGAAATATGCGGAGGTTGCTGAGAAATGCTTGAGGGTGAATGGTGTGGAGAGGCCGGCGATGTTGGATGTTTGCTG GGATTTGGAGTACGCGTTGCAGTTGCAGAAGAGTACGGTGAAGAGAGATCCGTCGGAGGATAGTATGACGATGACCGACGGTGGTTACTCCGGCAGTGTT ATGAATATTAGGGCGGTTGGTGAGAGCTTCATCAGTGTTGATGAATGTGAAGAGGGGTTTTCAATTGGTGGGGACAGGTTCGGTGATTCTGTGATCATGG ATAGTGAAATGTTTTCACACCATAGGATTGATCGATCGGTGGTGGATAGATAA
AA sequence Show only first row Show all	>Lus10010443 pacid=23154160 polypeptide=Lus10010443 locus=Lus10010443.g ID=Lus10010443.BGIv1.0 annot-version=v1.0 MEKPNSNCYTLLYLLPIYLQFLCFFSLPSSSVAADSSTNRLRINCGSASTVDDANYGTFTGDKSHKFFRISEGSNTATATPAGTNNSLYQTARIFSQPSR YTLEVAPNSPYYLLRLHFAAFYTQSANLYAAVFHVSTSSKALLRNFSTPNSTVLVSEFYVPVANSSEFRIYFIPAETNTSSSSLSSPLAFVNAIEFLRLP DANLFAHHSQSQAFHTLYRVDVGGGGGQDDNENSLRRQWSPDKDYYATPSVGTSRNKSMGARPAYDEDLAPLFILRSCRSETSEINGPNPSNLTWRFQVK RNSKQFVRLYFFNCVGSSPEEFNIYINDFKEPRDDVFTDPQRQEYVVDSGGSEYVNISISPQKAEDMKKSAYLSALEIMEFLPNTTVNDSDIHDENLTYF PRNLVIGLSVAGGLVIALILSIVFVLRFRRRRKKKKNSSDSKSKSKSSTAASGKKFHSWMTVNNNTNSQGSPLPELNLKLKMPLAEILAATDNFNPERLI GSGGFGKVYEGKLVSTGVKVAVKRSEESGHGQGLPEFHTEVLVLSKIRHRHLVSLIGYCDDEDEMILVYEFMKNGTLREYLYTSEHEPPPPLLNWKQRLE ICIGSATGLHYLHTGSDGGIIHRDVKTTNILLDDNLVAKVADFGLSQSGPPDPDHHTMALKGSFGYLDPEFFRTLQLTDKSDVYSFGVVMLEVLCARPPI VNSSNAEEINLAEWGLAWQKKGEIEKIVDPLIAGEINPSSLRKYAEVAEKCLRVNGVERPAMLDVCWDLEYALQLQKSTVKRDPSEDSMTMTDGGYSGSV MNIRAVGESFISVDECEEGFSIGGDRFGDSVIMDSEMFSHHRIDRSVVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	0	1
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	1.0	0.7414
AT2G36430			Plant protein of unknown funct...		Lus10035569 [exp]	2.4	0.7084
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	18.7	0.6686
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	20.9	0.6430
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	24.7	0.6003
					Lus10016844 [exp]	28.2	0.5947
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	28.9	0.6591
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	37.4	0.5560
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	39.5	0.6389
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	51.8	0.5712

Compare expression of checked genes

Lus10010443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.