Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51110 456 / 7e-160 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 44 / 8e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 44 / 8e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 42 / 0.0006 FIB fibrillin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012100 [exp] 707 / 0 AT1G51110 511 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020982 [exp] 50 / 1e-06 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011700 [exp] 512 / 0 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 48 / 5e-06 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 45 / 4e-05 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 42 / 0.0003 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10010444 pacid=23154107 polypeptide=Lus10010444 locus=Lus10010444.g ID=Lus10010444.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTTCTAACTGGCGCCCTCGCACTTTCCCCACGTTTGAACAACAACTCTCCACAGCCTACATCGTTCCATGGAAGACGAATCCGGAACCATT TCCGATGCCGTTCCTCGATTCTAAACCAGCAGGAAGAGAAGAAGAAGGATCTTCCTGTATTCTCCGAACCAGAGACCCGCCTGATCGACGCGCTCATTGG AATCCAAGGACGAGGAAAATCCGCCACTCCTCAGCAGCTCAACGAAGTAGAGGAAGGAGTCAGAGTGTTGGAAGGCCTCGAAGGATTGCCCGAGCCGACA GAATCGAACCTGATTGAAGGGAGGTGGCAACTGATGTTTACAACTAGGCCAGGAACTGCATCCCTACTTCAGAGAACATTCGTGGGGGTTGATTTCTTCA AAGTTTTTCAAGAGATCTACCTTCGAACCGATGATCCCCGAGTTTTGAATATCGTACTTTTCCCCGATGCAGTTGGTGAGCTGAAAGTCGAGGCAGCAGC ATCAATTGCTAATGGGAAACGGATCCTGTTCCGATTCGACAACGGAGCTTTCTCGTTCAAGTTCCTGCCGTTCAAAGTTCCCTATCCAGTGCCATTCAAG CTTCTTGGGGACGAAGCAAAGGGTTGGCTCGACACGACCTACTTGTCCCCCACCGGAAACCTTCGAATCTCAAGGGGAAGCAAGGGCACCACCTTTGTGC TCCAAAAGGAGACCGAGCCTCGGCAGAAACTGCTGGCCGCCATTTCTTCTGGAACACAAGTTGCAGAGGCAATCGACGAGTTTCTACAAGCGAAGAAGGA TGTAGTCAAAGGTGAGCAGAAATTGCTCGAAGGTGAATGGCGAATGGTCTGGAGTTCTCAGACCGAAACGGATAGTTGGATCGAGAATGCTGCCAATGGA CTCATGGGAAACCAGATAGTGAAAAGCAACGGACAGATGAAGTTTGTAGTAGACATGTTGCTTGGACTCAGATTCTCCATGTCCGGAACATACCAGAAGT CGAGCAGCGAAAACAACACATACAATGTGATCATGGACGATGCAGCCATCATCGGGGGTGTGTTTGGGTACCCTGTAGAGCTCGGGACCAAGATGGACCT AGAGTTGTTATACACAGACAACAAAGTGAGAATCAGCAGGGGGTACAATCGAATTCTATTTGTACACGTACGGATCGATGGAGGGACCGTGTAA
AA sequence Show only first row Show all	>Lus10010444 pacid=23154107 polypeptide=Lus10010444 locus=Lus10010444.g ID=Lus10010444.BGIv1.0 annot-version=v1.0 MAAVLTGALALSPRLNNNSPQPTSFHGRRIRNHFRCRSSILNQQEEKKKDLPVFSEPETRLIDALIGIQGRGKSATPQQLNEVEEGVRVLEGLEGLPEPT ESNLIEGRWQLMFTTRPGTASLLQRTFVGVDFFKVFQEIYLRTDDPRVLNIVLFPDAVGELKVEAAASIANGKRILFRFDNGAFSFKFLPFKVPYPVPFK LLGDEAKGWLDTTYLSPTGNLRISRGSKGTTFVLQKETEPRQKLLAAISSGTQVAEAIDEFLQAKKDVVKGEQKLLEGEWRMVWSSQTETDSWIENAANG LMGNQIVKSNGQMKFVVDMLLGLRFSMSGTYQKSSSENNTYNVIMDDAAIIGGVFGYPVELGTKMDLELLYTDNKVRISRGYNRILFVHVRIDGGTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	0	1
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039449 [exp]	1.4	0.9702
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	2.0	0.9693
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	2.2	0.9608
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	2.4	0.9663
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	3.5	0.9580
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	3.6	0.9485
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	4.0	0.9618
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	4.6	0.9567
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	4.9	0.9566
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10030969 [exp]	5.1	0.9347

Compare expression of checked genes

Lus10010444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.