Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 665 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 637 / 0 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 487 / 2e-160 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012099 [exp] 1514 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10039002 [exp] 1172 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 1110 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031788 [exp] 567 / 0 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 101 / 1e-21 AT1G79090 766 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021900 [exp] 896 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020100 [exp] 889 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 641 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 613 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 577 / 0 AT1G79090 687 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010445 pacid=23154070 polypeptide=Lus10010445 locus=Lus10010445.g ID=Lus10010445.BGIv1.0 annot-version=v1.0 ATGGAGCGATCTGCTTCTGGTAAAGATTCCTTCTTGAAGGACTTCAGTGAGGCTTCCTCTTCCGGTTCTTCGCGGTTTGATGCATCACAGTATGAGTTTT TTGGTCAACATGCTGGGCAAGGAGTGGAGCTAAGTGGTCTGGAAGAGGATGACAATCCTGTCTTTGGACCTGTCGATGATGAATACCGTTTGTTTGATAG AGATGAGGGTGCAAGTGTAGGATCTCTATCCGATATGGATGATTTGGCAAGTACTTTTGCAAAGTTGAACCGAGTTGTTAGTGGTCCAAGGAATCCAGGA GTGATCGGTGATCGGGGATCAGGATCATTCTCCAGGGAAAGTTCTTCTGTTGCTGAATGGGCACAGGATGGTGAATCTTCTTCGTGGCTCGATCAGCAGA GATTTGATGCAGAATTATTTCATGATTCCCGGTCTCTATCGCTTAACCAACCTTCATCTGCCAGATTTACGGAATCAAAGCCTTTGTACAGAACCTCCTC CTATCCACAGCAGCAACTTGGAGAATCCAGTAACTGGCTAGATCAGCAGATATTCGATACAGAAAGGCTTCAGGAAAACAAGAGATGGTCATCACAGCCG TCAATCCATTTTGCGGAATCAAAACCGTTGCACAGAACTTCTTCGTATCCTCTACCACCACAGCATCAGCATCATTTCTCCAGCGAACCAGCCCCTGCAG TGAAATTGAATTTCACTTCTTTTCCTCCTCCCGGGGGCGGTAGAATCGATCAGCCTGTACCTCCGCAGTACCATAGCGTCCCTTCTCCTGCCGGATTGCA GTTGCCATTTTCTGCCCCGAATTTGTCTCCTTTATCCAACCCTAACTTCCATTTGGCTGGTTTACATCGTGGAGCGCGCTCTGGCCTTTCTTTTAGTAAC AGGCCTCAAAACCAATGGGTCAACCCGGGTGGCTTGCTGAGTGTTGACCATGCTAGTCTCTTGCAGAGTGTATTGCAACAACAGCTCTCTCATCAGAATG CGTTGATGTCTCCACATTTGTTGTCCCCTCAGCAGCATCGGCTGCATTCTTCAATTCAACCTTCTATGGCTCATCTGGCTCAACTTTATGCTCCGAATTC CTCGGCTCAGAGATTAATGCTCGGTATAGGTGATGGCAGGGATCAGCAGCATCAAAAGCCTAAATCTTCACATCGAGGGCGGCATAATTCGCGATCTTCT CAACAGGGTTCTGATTCCGGTACTCAGAGAAGTGATAGCGGTGGTGTATCTGTTCAGTTTAGATCGAAACATATGACGTCTGAAGAGATCGAGAGCATTC TGAAAATGCAGCATGCTGCTACACACGGTAACGATCCTTACGTAGATGATTACTACCATCAAGCTCGTCTTGCCAAGAGATCGACCGGCTCGAGATCAAA ACATCACTTCTGCCCTTCTGTTCTTAAAGAGCAACATTCCCGCTCTCGTAATAATAGCAGTAGCACTGAGCAGCAGTCTTATCATGTTGATGCTCTCGGC AAGGTTCCGATACCCACCATACGAAAGCCTAGCTCCCTTCTCGAACCGGGTCCTATTTCTGCCGACGGCTCTGATCAGGTTTCCGAGAGGCCGCTCGAGA AGGAGCCGATGCTTGCAGCTAGAATGATGATCGAAGATGGGTTATCTGTGCTTATTGATGTCGAGGACATTGATCGATATCTTCTGTTTAATCAGCCTCA AGATGGCGGTGTTCAGCTCAGGCGGAGGCGCCAGATCCTGCTTGAGACTTTGGCGTCAGCACTTCAGCTGGTCGATCCTTTAGGCCAGAGTGGGACTGCT TCCGGACCTGCATCCAAGGATGATATTGTCTTTTTGCGGTTAGGGTCTATGCCAAAGGGTAGACAGCTTATCTCGAAGTTTCTTCAGCTTCTTATCCCCG GTAATAATCTTGTCCGTGTTGTCTGCATGGCTGTTTTCCGACACCTGAGGTTCCTTTTCGGTGGTGTTCCCTCCGATCCAGCTGCAGCCAAGACGAGTGT TCATCTGGCTAAGATAGTGTGTTCTTGCATTAGCGGTATGGATCTTCACGCACTTAGTGCTTGCCTTGTTGCGGTGGTTTGCTCGTCGGAACAGCCGCCG TTTCGGCCTCTCGGTAGTCCAGCTGGCGATGATGCCTCGGTGGTTTTGAAGTCCGTTCTCGAGAGGGCCACTTACCTCTTGACCGACCCTCAAGCTGCTG TCGCCGGCTGTCCTGTACCAAATTTCCAGTTCTGGCAGGCATCGTTTGACGAATTCTTCGATATGCTGACAAAGTATTGCCTTGCGAAATACGAAACTAT CCTTCAGTCAGTCTATGCGACGAAGACACCAGCTGGCATGGATAAAGATATCGACGAAGATGTGCACGCAGCTACGAAGCGGGAGATGCCTGTGGAGCTG CTTCGCGCTTGCCTTCCGCACACTAACGAGAAGCAAATGGAGTTTCTAAGACATTTCGGACAGCAACGCAGTTCTGTGACTGGGATGGGCATGCATGGAG GATCCAATGTTCCGATAAGCTCCGAATCTGTGAGAAGCTGA
AA sequence Show only first row Show all	>Lus10010445 pacid=23154070 polypeptide=Lus10010445 locus=Lus10010445.g ID=Lus10010445.BGIv1.0 annot-version=v1.0 MERSASGKDSFLKDFSEASSSGSSRFDASQYEFFGQHAGQGVELSGLEEDDNPVFGPVDDEYRLFDRDEGASVGSLSDMDDLASTFAKLNRVVSGPRNPG VIGDRGSGSFSRESSSVAEWAQDGESSSWLDQQRFDAELFHDSRSLSLNQPSSARFTESKPLYRTSSYPQQQLGESSNWLDQQIFDTERLQENKRWSSQP SIHFAESKPLHRTSSYPLPPQHQHHFSSEPAPAVKLNFTSFPPPGGGRIDQPVPPQYHSVPSPAGLQLPFSAPNLSPLSNPNFHLAGLHRGARSGLSFSN RPQNQWVNPGGLLSVDHASLLQSVLQQQLSHQNALMSPHLLSPQQHRLHSSIQPSMAHLAQLYAPNSSAQRLMLGIGDGRDQQHQKPKSSHRGRHNSRSS QQGSDSGTQRSDSGGVSVQFRSKHMTSEEIESILKMQHAATHGNDPYVDDYYHQARLAKRSTGSRSKHHFCPSVLKEQHSRSRNNSSSTEQQSYHVDALG KVPIPTIRKPSSLLEPGPISADGSDQVSERPLEKEPMLAARMMIEDGLSVLIDVEDIDRYLLFNQPQDGGVQLRRRRQILLETLASALQLVDPLGQSGTA SGPASKDDIVFLRLGSMPKGRQLISKFLQLLIPGNNLVRVVCMAVFRHLRFLFGGVPSDPAAAKTSVHLAKIVCSCISGMDLHALSACLVAVVCSSEQPP FRPLGSPAGDDASVVLKSVLERATYLLTDPQAAVAGCPVPNFQFWQASFDEFFDMLTKYCLAKYETILQSVYATKTPAGMDKDIDEDVHAATKREMPVEL LRACLPHTNEKQMEFLRHFGQQRSSVTGMGMHGGSNVPISSESVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14990			Topoisomerase II-associated pr...		Lus10010445 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	8.8	0.6881
AT3G52260			Pseudouridine synthase family ...		Lus10023503 [exp]	10.2	0.7375
AT3G19670		ATPRP40B	pre-mRNA-processing protein 40...		Lus10006142 [exp]	23.3	0.7313
AT3G10330			Cyclin-like family protein (.1...		Lus10016260 [exp]	37.4	0.6645
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	44.0	0.6794
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	106.4	0.6273
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	122.0	0.6377
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	143.5	0.6292

Compare expression of checked genes

Lus10010445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.