Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56930 427 / 3e-143 DHHC-type zinc finger family protein (.1.2) AT5G05070 377 / 1e-124 DHHC-type zinc finger family protein (.1) AT2G40990 350 / 5e-114 DHHC-type zinc finger family protein (.1) AT3G56900 345 / 1e-111 Transducin/WD40 repeat-like superfamily protein (.1) AT3G56920 324 / 5e-105 DHHC-type zinc finger family protein (.1) AT3G48760 317 / 2e-100 DHHC-type zinc finger family protein (.1) AT3G26935 315 / 4e-100 DHHC-type zinc finger family protein (.1) AT5G50020 305 / 2e-96 DHHC-type zinc finger family protein (.1.2) AT4G24630 298 / 3e-94 DHHC-type zinc finger family protein (.1) AT5G41060 281 / 5e-88 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012096 [exp] 686 / 0 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 377 / 2e-124 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 370 / 7e-122 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10035395 [exp] 370 / 3e-118 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 323 / 4e-103 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 321 / 2e-102 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 315 / 8e-100 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 315 / 1e-99 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 302 / 2e-94 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025100 [exp] 479 / 9e-163 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 461 / 6e-156 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.016G025200 [exp] 380 / 7e-126 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.016G030400 [exp] 380 / 4e-125 AT3G56900 653 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G027500 [exp] 369 / 1e-121 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 312 / 7e-99 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 311 / 7e-99 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 311 / 2e-98 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 310 / 4e-98 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 310 / 5e-98 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010447 pacid=23154110 polypeptide=Lus10010447 locus=Lus10010447.g ID=Lus10010447.BGIv1.0 annot-version=v1.0 ATGAGAGTTCCAGAGAAGAGAGGCTTAAACCCTGCAAATGACGACGAAGTGGAAGACTGGAAGAGGATAAGTTCGGGTACTGTATTCAGTCCGGTTCAAT TCCAAGCCGATCAGCTTGCGACTCCGGAGAAGGAATCGGCGCCACAGGGAAGTAGCACTGGAGATACTGCTGGGCGGAATATTATAGGGAAAGCGTTTCA GGGCTTGGTTAATCTTCTTCAGCCAAACTATGTGAACCTGTTGCCAGAGGTTGGTCTCCAAGGTGTTTCTTGGCATCAGCAGAAGCACATAATTGCATTT GTTTCCGGCCAAAACCAAGTAACAGTTTGCGACTATGAAGATTCGGGTAATGCGCCAGTAGGAAGATCTGGCATTACCTCATACCTAGGCAATGCTTCTG GAGGATCTGGATCTCAGTGGGCTCTTGTTGATTTTCTTCGAAGTAGCAACAATGAACAAATAACTGCACTCTCATGGAGTCCAGATGGAAGATATCCTTA TCACTGCGTGTCTGCATTGCTCTGTTGTCTTTTGTTGGAAGAATTGTCCTTGACTCTCCTATACATATTTGGCATCTGCTTCTTACGAGAGCTCAGCTTT CACCATGTGGGATGTTGCACAAGTGATGGTACATTTTATTTGTGGGAGACAAACACATGGACATCTGAACAGTGGTCTGCTTCTAGTGGTTTCGTCACGG GCGCACAATGGGATCGTGATGGCCGTATTATTCTGCTTGCTTTCTCTGGATCCTTAACTCTGGGTTCTGTACACTTCGCATCAAAGCCTCCCTCTTTAGA TGCACACCTATTACCTGTCGATTTGCCAGAGATAACGACGTTGACGGGAAGTCATGGCATTGATAAGGTAGCCTGGGATGCTTCTTGCGAACGCTTAGCT GTGTCGTATAAGGGAGGGGACGAAGCCTACAACGGTCTTATTGCCGTGTACGACACAAGGAGGACTCCTCTCGTCTCTGCATCTCTAATCGGCTTTATCA GGGGACCTGGAGAAAACCCGAGGCCAATCACAATTTCATTTCACAACAAGTTCAAACAGGGACCGTTGCTTTCTGTGAGGTTTTTCTGTGGTGGGAGACT GATCTTTGGTCCTGATGTTGCCTCGATGTTCTTGTCGATGTTCCTTATCGCTGCTCCTTCGATCGCGTTCTGTGCGAAGCTGTATTACAAGATTGTGAAG GATGGTGTCGAGAATCCGGCACGTTGGTATTCTGTCTTGGTTGTTGGATGTTTACTCACTATCTTGGATCTAGTATTCCTATTGTTGACATCTTGCAGAG ATCCAGGAATAGTGTCGAGAAACTCGAAGCCTCCAGAGTCAGAAGATAATTCGGACATAACTACCCCTTCCATGGAGTGGGTGAACGGTAGAACCCCACA CCTGAAGTTACCACGCTCCAAGGACGTGGTAGTAAATGGCCATACAGTGAAAGTCAAGTACTGCGATACGTGTTTGCTTTATCGCCCTCCTCGGGCTTCT CATTGTTCGATCTGCAACAACTGTGTCCAGAGGTTTGATCATCACTGTCCCTGGGTCGGACAGTGCATTGGCATACGTAATTACCGGTTTTTCTTCATGT TCATATCAACAGCAACCATCTTGTGTATATATGTCTTTGTGGTCTCTTGGATCAATCTCCTTCACAGAGGTGTCCGTGTTTGGAAAGCTATGTCGCAAGA TGTGGTCTCCGATTTCCTTATAGTCTACTGTTTCATTTCTGTCTGGTTCGTTGGAGGCCTGTCAATCTTCCATTTCTATCTGATCTGTACAAACCAGAGT ACCTATGAGAATTTCCGGTACAGATACGACAAGAAGGAGAATCCATACAACGAAGGGACCGCGAAAAACCTGTTCGAGACTTTCCTCACAAGGATCCCAC CTTCCACGATCAAGCTACGCTCGATCGCGGTAGAAGATCCTCAAGTTGCAATGGAGCCCTTGGTGGAAGATGAGTTTACGGGCTCAAAGGATAACTATGA TGCTGAGAGGAGAGTTAAGTATGCGGGGGGTCATAACTACTCTCTTCCTGAGATTTTGCGGAATCTGGATTTCGACGATGATGATGACTCTCTTGATAAC TCGAAGAAGCTCGAAGGTGGAAGGACGTCTGCTTATGAACAAAGGGTTACTAGTGAAAGACAATAA
AA sequence Show only first row Show all	>Lus10010447 pacid=23154110 polypeptide=Lus10010447 locus=Lus10010447.g ID=Lus10010447.BGIv1.0 annot-version=v1.0 MRVPEKRGLNPANDDEVEDWKRISSGTVFSPVQFQADQLATPEKESAPQGSSTGDTAGRNIIGKAFQGLVNLLQPNYVNLLPEVGLQGVSWHQQKHIIAF VSGQNQVTVCDYEDSGNAPVGRSGITSYLGNASGGSGSQWALVDFLRSSNNEQITALSWSPDGRYPYHCVSALLCCLLLEELSLTLLYIFGICFLRELSF HHVGCCTSDGTFYLWETNTWTSEQWSASSGFVTGAQWDRDGRIILLAFSGSLTLGSVHFASKPPSLDAHLLPVDLPEITTLTGSHGIDKVAWDASCERLA VSYKGGDEAYNGLIAVYDTRRTPLVSASLIGFIRGPGENPRPITISFHNKFKQGPLLSVRFFCGGRLIFGPDVASMFLSMFLIAAPSIAFCAKLYYKIVK DGVENPARWYSVLVVGCLLTILDLVFLLLTSCRDPGIVSRNSKPPESEDNSDITTPSMEWVNGRTPHLKLPRSKDVVVNGHTVKVKYCDTCLLYRPPRAS HCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTATILCIYVFVVSWINLLHRGVRVWKAMSQDVVSDFLIVYCFISVWFVGGLSIFHFYLICTNQS TYENFRYRYDKKENPYNEGTAKNLFETFLTRIPPSTIKLRSIAVEDPQVAMEPLVEDEFTGSKDNYDAERRVKYAGGHNYSLPEILRNLDFDDDDDSLDN SKKLEGGRTSAYEQRVTSERQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56930			DHHC-type zinc finger family p...		Lus10010447 [exp]	0	1
					Lus10041183 [exp]	8.8	0.8051
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	16.0	0.8416
AT1G67420			Zn-dependent exopeptidases sup...		Lus10037015 [exp]	23.1	0.8155
					Lus10019690 [exp]	27.5	0.8178
AT1G03910			unknown protein		Lus10035324 [exp]	46.1	0.7626
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10027965 [exp]	50.8	0.7674
					Lus10019691 [exp]	66.9	0.7856
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	72.9	0.7869
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	91.5	0.7388
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	120.2	0.7768

Compare expression of checked genes

Lus10010447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.