Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41290 62 / 4e-11 SSL2 strictosidine synthase-like 2 (.1) AT2G41300 49 / 2e-06 SSL1 strictosidine synthase-like 1 (.1) AT5G22020 47 / 7e-06 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 45 / 1e-05 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 45 / 3e-05 SSL3 strictosidine synthase-like 3 (.1) AT3G59530 44 / 6e-05 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012095 [exp] 212 / 2e-67 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10008151 [exp] 45 / 2e-05 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 45 / 3e-05 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019148 [exp] 40 / 0.0004 AT3G57030 123 / 3e-34 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10034411 [exp] 0 / 1 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040900 [exp] 105 / 3e-26 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 103 / 2e-25 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.017G027600 [exp] 56 / 7e-09 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 47 / 5e-06 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.007G130700 [exp] 46 / 1e-05 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.016G037900 [exp] 0 / 1 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 0 / 1 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 0 / 1 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010449 pacid=23154080 polypeptide=Lus10010449 locus=Lus10010449.g ID=Lus10010449.BGIv1.0 annot-version=v1.0 ATGGAACCGAACTTGGTCAATGATTTCCCAATCCATGGATTTGATACCACCCACTCAAGCAACTTGGTTCACTTGGAGTACATCCCAACCCAATACCCAC CTCTTGGGCTTCTCCTTATGTTGTCTGGATACCCATCTAGTTGGGCAAAGGGTTTCAACTCACCACTCTCAATATGGTACTTTAGGACCCTCCCATTGGT TGTCTCCACTACCAAGATAGATTGCCCATCATGGGTTATTGCCACCCCATTGGGGAACATTAGGTTGCTTGCTAGTTGGGTCGCTTGTCACGTCTTGGGG TCGTATTTGATGAACCTTCCTGTATCGTCCCCGCTGAACACGATCAGTGCGTGGTATCTGAACGAGAAGATGATTACCGTGGAATTGAGTCCAACCTTGC TCCCGGATAAGAACAATGAACATGGAGCTGCTATCGGTGAAGTAAACGACTCCGGACGACTGATTAACATCCAAGCCGTTGGTGAAGACGAGAGGAGCGC CATTGACCAATTACTAACCATCGATCCCTCAAAAGCATCATCAAGCTCTTCTTCTCCGCCTTCATTTTTTTCTTCATCCTCTTCATCGTCTCAACCATCG TCGCTCTTCCTCCCGAGTCCCACTCCACGCCACTCCCACCTCGCCACATCATCGATCGTTATCACCACAAAATGTCGCTGCCGCCAACCACCAAGAGCAA CCCTCTTTCTCCATCACTCTCTCCCCGACGATCCACCGCTCAACTAA
AA sequence Show only first row Show all	>Lus10010449 pacid=23154080 polypeptide=Lus10010449 locus=Lus10010449.g ID=Lus10010449.BGIv1.0 annot-version=v1.0 MEPNLVNDFPIHGFDTTHSSNLVHLEYIPTQYPPLGLLLMLSGYPSSWAKGFNSPLSIWYFRTLPLVVSTTKIDCPSWVIATPLGNIRLLASWVACHVLG SYLMNLPVSSPLNTISAWYLNEKMITVELSPTLLPDKNNEHGAAIGEVNDSGRLINIQAVGEDERSAIDQLLTIDPSKASSSSSSPPSFFSSSSSSSQPS SLFLPSPTPRHSHLATSSIVITTKCRCRQPPRATLFLHHSLPDDPPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010449 [exp]	0	1
					Lus10029449 [exp]	5.7	0.8440
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	8.1	0.8537
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	12.6	0.8410
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	15.4	0.8019
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	16.5	0.8392
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	17.9	0.8384
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	17.9	0.8205
					Lus10033138 [exp]	19.2	0.6937
					Lus10018552 [exp]	19.7	0.8380
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10019046 [exp]	21.9	0.7208

Compare expression of checked genes

Lus10010449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.