Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13780 936 / 0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) AT3G55400 140 / 4e-35 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT5G02680 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016658 [exp] 986 / 0 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10022571 [exp] 962 / 0 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Lus10005156 [exp] 146 / 1e-36 AT3G55400 931 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10001704 [exp] 128 / 5e-31 AT3G55400 891 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) Lus10015552 [exp] 45 / 0.0002 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057700 [exp] 995 / 0 AT4G13780 1255 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.001G317500 [exp] 967 / 0 AT4G13780 1260 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1) Potri.010G207300 [exp] 154 / 5e-40 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF09334 [flax] [poplar] tRNA-synt_1g tRNA synthetases class I (M)
Representative CDS sequence Show only first row Show all	>Lus10010450 pacid=23154100 polypeptide=Lus10010450 locus=Lus10010450.g ID=Lus10010450.BGIv1.0 annot-version=v1.0 ATGGAGAACCTATCTTCCGACGCCGCCGTTCCGAAGAAGCTTCCAATTCCCGGCAAGGACAACGTACTGATCACCAGTGCGCTGCCGTACTGCAACAACT TCCCTCATCTCGGCAACATCATCGGCTGCGTGCTGAGCGCCGACGTGTTCGCCAGGTATTGCCGGCTGCGAGGCTACAACACGCTGTACATTTGCGGAAC CGATGAGTACGGGACGGCTACGGAGACCAAGGCTATGGAGGAGAAGAGCACGCCGAGGGAGACTTGCGATAAGTACCATGCTCTTCATAGCGAGGTTTAC GAGTGGTTCGACATTGATTTCGACTTGTTCGGGCGGACCTCGACCCCGCAGCAGACTGAAATATGTCACCAGATCTTCAACAAGCTGCTGGAGAACAACT GGCTTGCTGAGGAAACAACAGAGCAGCTTTACTGTGGTACATGCGAGAAATTCCTTGCGGATAGGCTAGTTGAGGGCACTTGTCCAACTGAAGGATGTAC GAATACGAGGGCGAATGGGGACGAGTGTGAAGTATGCGGGAAGTTCCTCAATCCTACCGAGTTAAAAGATCCTAAGTGCAAGGTTTGTCGCAACTCGCCA CAAATTCGTGATACATGCAACCTGTATATTGAGCTTCCCCTGCTAAAAGATCAATTGGTGAAATATATCGAGAGTGCATCGGTTGCTGGATCCTGGAGCC AGAATGCTCTACAAGAAACAAATTCATTGTTTAAAGACCTGAAACATAGGTGTATTACCAGAGATCTAAAATGGGGAGTCCCTGTGCCCCATGAGAAGTT CGCGGACAAGGTCTTTTATGTCTGGTTTGACGCTCCAATTGGATATGTCTCGATTACGGCCTGCTATACTCCAGATTGGGAGAAATGGTGGAAGGATCCT AAAAATGTCAAGCTCTATCAATTCATGGGGAAGGATAACACTAAGTTCCATACTATTATGTTTCCTTCATGTCTTCTTGGAACTGGCGAAAACTGGACGA TGATGAAGAGTATAAGTGTCACAGAATACTTGAATTATGAAGCAGGAAAGTTCTCGAAAAGTAAAGGAATAGGAGTCTTTGGTAATGATGTGAAAGAAAC AGGGATACCTGTAGAAGTATGGAGATACTATTTACTAGCTAATCGTCCCGAGATTTCAGATACACTATTTACCTGGAAAGATTTGCAAAGCAAGCTCAAC AATGAGTTGCTTAAAAGTTTGGGGAACTTCATCAATCGAGTTTTGACTTTCATTGCTAAACCACAAGGTGCCGGATATGATTCCATTATCCCTGATACAC CAGGCGCTGAATCTCACCTCTTGACAAAGCAATTGGCTGTTGAAGTGGGCAAATACGTCGATCAGTATCTGGAAGCCATGGAGATGGTCAAGTTGAAACA AGGACTCAAAACAGCAATGGCCATTTCTAGCAAGGGGAATGCATATCTTCAGGCTAGCAAGTTTTGGAAATTGTACAAGCAAGACCAGCCTTCCTGCGCT ATCGTCATGAGGACTTCAGCCGGCCTCGTTCATCTTCTCGCTTGTTTGTTGCAACCTTTCATGCCATCATTTTCTGCTAAGGTATATGAGCAGCTTAATT TACTTCCTGACCAAGCTTCGCTCTGCAAGGAGAAAGGCGACATCGATAGGGCAAAGAGGCCATGGGAGATCATTCCTCCAGGCCATAAAATCGGGACTCC CGCTCCATTGTTCAAAGAACTGAAAGATGAAGAAGTGGAGTCCTTCAGAAGCCAGTTTGCGGGTAGTCAGCAAGAGAGAGCTGAAGCTGCTACGGTTGCT GCTCAATTGGACAAAGAAGGTAACATTCGAGAATAG
AA sequence Show only first row Show all	>Lus10010450 pacid=23154100 polypeptide=Lus10010450 locus=Lus10010450.g ID=Lus10010450.BGIv1.0 annot-version=v1.0 MENLSSDAAVPKKLPIPGKDNVLITSALPYCNNFPHLGNIIGCVLSADVFARYCRLRGYNTLYICGTDEYGTATETKAMEEKSTPRETCDKYHALHSEVY EWFDIDFDLFGRTSTPQQTEICHQIFNKLLENNWLAEETTEQLYCGTCEKFLADRLVEGTCPTEGCTNTRANGDECEVCGKFLNPTELKDPKCKVCRNSP QIRDTCNLYIELPLLKDQLVKYIESASVAGSWSQNALQETNSLFKDLKHRCITRDLKWGVPVPHEKFADKVFYVWFDAPIGYVSITACYTPDWEKWWKDP KNVKLYQFMGKDNTKFHTIMFPSCLLGTGENWTMMKSISVTEYLNYEAGKFSKSKGIGVFGNDVKETGIPVEVWRYYLLANRPEISDTLFTWKDLQSKLN NELLKSLGNFINRVLTFIAKPQGAGYDSIIPDTPGAESHLLTKQLAVEVGKYVDQYLEAMEMVKLKQGLKTAMAISSKGNAYLQASKFWKLYKQDQPSCA IVMRTSAGLVHLLACLLQPFMPSFSAKVYEQLNLLPDQASLCKEKGDIDRAKRPWEIIPPGHKIGTPAPLFKELKDEEVESFRSQFAGSQQERAEAATVA AQLDKEGNIRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	3.5	0.7933
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	3.7	0.8173
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	7.1	0.7596
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	10.1	0.7342
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	10.7	0.7867
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	11.0	0.7719
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	12.6	0.7288
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	13.9	0.7639
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	13.9	0.7766
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	14.1	0.7544

Compare expression of checked genes

Lus10010450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.