Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41250 348 / 4e-121 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G14310 182 / 2e-56 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G44730 47 / 5e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039005 [exp] 415 / 2e-147 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027299 [exp] 414 / 5e-147 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10037187 [exp] 184 / 5e-57 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10036740 [exp] 177 / 1e-54 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015451 [exp] 50 / 5e-07 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037600 [exp] 402 / 1e-142 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 392 / 1e-138 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G093900 [exp] 182 / 3e-56 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10010452 pacid=23154112 polypeptide=Lus10010452 locus=Lus10010452.g ID=Lus10010452.BGIv1.0 annot-version=v1.0 ATGGCAGCAAGATCAACAAACTTGACGAAATCTCTTCTCTCGGAAGCTCTCAGCAGAAGAAGCAAGACTCTCGCTCCCGCCGTGAGATCAGCTGGACTTG CTACGGCGGGGGGGGGGGAGTCGCTCGGAGTGAAGGACTATGAAGATTACAGGAGGTCCTTATACGGCGGCGACATCACTCACAAGGCTCTCCTTGTCGA CGCCGTCGGTACTCTGGTGGTTCCTTCGCAGCCGATGGCTCAGATATATAAGCAGATTGGGGAGAAATATGGAGTTGACTGCTCGGAGGATGAGATACTG CGTAGGTACAGGAGAGCTTATGAGCAGCCTTGGGGTGGATCTCGTCTCAGATATGTTAACGATGGAAGGCCATTCTGGAAACACATAGTCACTTCTTCAA CAGGATGTTCAGATCACCAGTACTTCGAGGAGCTTTACAACTACTACACAACTGACAAGGCTTGGCACATCAATGACCCTGAAGCTGGGGAAGTATTCGA TGCCATACGAAAAGCTGGTGTCAAAGTAGCTATGGTGTCGAATTTCGACACTCGGTTGAGACCCCTCCTGCGTGCTTTGAACTGTGATCACTGGTTTGAT GCTGTTGCAGTTTCAGCTGAAGTATCAGCAGAGAAGCCGAATCCGACGATATTCCTGAAAGCTTGTGAGCTGTTGGAAGTGAAGCCAGAGGATGCTGTTC ATGTGGGAGACGATCGAAGGAACGACATCTGGGGTGCCAGAGATGCTGGCTGTGATGCATGGCTATGGGGAAGCGATGTGTATTCGTTCAAGGAGATCAA TCCTAACAAGAGGCATACCAACAATAACCTTAATGGGCTCTCCATTTCAGACCATGATTCTTTTAGAGGGATGTAA
AA sequence Show only first row Show all	>Lus10010452 pacid=23154112 polypeptide=Lus10010452 locus=Lus10010452.g ID=Lus10010452.BGIv1.0 annot-version=v1.0 MAARSTNLTKSLLSEALSRRSKTLAPAVRSAGLATAGGGESLGVKDYEDYRRSLYGGDITHKALLVDAVGTLVVPSQPMAQIYKQIGEKYGVDCSEDEIL RRYRRAYEQPWGGSRLRYVNDGRPFWKHIVTSSTGCSDHQYFEELYNYYTTDKAWHINDPEAGEVFDAIRKAGVKVAMVSNFDTRLRPLLRALNCDHWFD AVAVSAEVSAEKPNPTIFLKACELLEVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVYSFKEINPNKRHTNNNLNGLSISDHDSFRGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10008117 [exp]	3.5	0.9399
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	4.9	0.9447
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	5.5	0.9450
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Lus10007084 [exp]	9.2	0.9329
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	11.5	0.9440
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	11.7	0.9302
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10012696 [exp]	13.4	0.9104
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	14.3	0.9339
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	14.7	0.9301
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	15.5	0.9344

Compare expression of checked genes

Lus10010452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.