Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56970 96 / 2e-23 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56980 81 / 6e-18 bHLH ORG3, bHLH039 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 80 / 2e-17 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 74 / 3e-15 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT1G71200 40 / 0.0007 bHLH bHLH160 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003823 [exp] 301 / 2e-102 AT3G56970 129 / 1e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039006 [exp] 133 / 5e-37 AT3G56970 142 / 1e-40 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027300 [exp] 130 / 8e-36 AT3G56970 139 / 2e-39 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037600 [exp] 106 / 3e-27 AT3G56970 184 / 9e-58 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G037300 [exp] 103 / 3e-26 AT3G56970 162 / 5e-49 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037200 [exp] 94 / 2e-22 AT3G56970 168 / 2e-51 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010453 pacid=23154159 polypeptide=Lus10010453 locus=Lus10010453.g ID=Lus10010453.BGIv1.0 annot-version=v1.0 ATGATGGCAATGTCATCAACATCATCATTCTCCTCTCACCAATCCAATATTAATCTTCCTTTGATCCCATCATCTAATTGGCCTTTGTTATCAAATGATC CTGATTCGATAACCCTTCTACCTAATCTTAACCTTGATCAAGCCACTCTCTTCCCGGCGGCGGCCGGGCAAGTCGGTGGTGGGACGACGACGGTGAAGAA GATGAACCATAACGCGAGTGAAAGGGAAAGGAGGAAGAAGATCAATGCCCTTTATTCTTCCCTACGTAGCTTGCTTCCTTCTTCTGATCATCATCCCATG AAGAAGCTAAGCATACCAACAACAGTCTCCAGAGTGGTGAAGTACATACCAGAGCTTCAACAACAAGTAGAAACCCTAACATTAAAAAAGAAGCAATTGA TATCGACCTCATTACCTCATATCCCTAAGCCTGAACATGTGCAAACCCTAGGCGAACAAGACGAACAACAACACATCACCAATCTCGATCGCAATCGAAG AGTCAGTTTAGTCGGTACTAACAAGATAATTAGTGGTACTAATTTCTCCTCGTCTTCATCCTCATCCTCTGTTTCGACGAGTTGGGTGAGCGACGATGAA GTCATGGTACAAGTTTCGGTCGACACGACCAACAACATGGTTCATGTTTCGGATTTGCTGTTCCATCTCGAAGAAGAGTGTGGACTCATCGTGATGAATA CTTCCTCGTTGACGTCTCCTCAAGGAATGACATTCTACAATCTCCATCTTCAGGTGGAGGAGTGTCGTAGAGGACTCATATTATTGGATAGTGAAGCTTT AAGTGAGAAGCTCACCAGCTTGGTTGAACAAGGAAGAAAACTTGTTTGTTCCTAA
AA sequence Show only first row Show all	>Lus10010453 pacid=23154159 polypeptide=Lus10010453 locus=Lus10010453.g ID=Lus10010453.BGIv1.0 annot-version=v1.0 MMAMSSTSSFSSHQSNINLPLIPSSNWPLLSNDPDSITLLPNLNLDQATLFPAAAGQVGGGTTTVKKMNHNASERERRKKINALYSSLRSLLPSSDHHPM KKLSIPTTVSRVVKYIPELQQQVETLTLKKKQLISTSLPHIPKPEHVQTLGEQDEQQHITNLDRNRRVSLVGTNKIISGTNFSSSSSSSSVSTSWVSDDE VMVQVSVDTTNNMVHVSDLLFHLEEECGLIVMNTSSLTSPQGMTFYNLHLQVEECRRGLILLDSEALSEKLTSLVEQGRKLVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10010453 [exp]	0	1
					Lus10000363 [exp]	4.4	0.9978
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	4.5	0.9550
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	4.7	0.9453
					Lus10003285 [exp]	6.2	0.9978
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10023673 [exp]	7.1	0.8980
					Lus10004996 [exp]	7.5	0.9978
AT2G28780			unknown protein		Lus10005903 [exp]	8.2	0.8327
					Lus10025781 [exp]	8.7	0.9978
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	9.7	0.9978
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10019770 [exp]	10.7	0.9978

Compare expression of checked genes

Lus10010453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.