Plant FIBer expression Database

Lus10010456 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14680 526 / 1e-180 MEE13 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003821
[exp]
1162 / 0 AT2G14680 567 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G087100
[exp]
657 / 0 AT2G14680 608 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Potri.001G292800
[exp]
649 / 0 AT2G14680 607 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10010456 pacid=23154092 polypeptide=Lus10010456 locus=Lus10010456.g ID=Lus10010456.BGIv1.0 annot-version=v1.0
ATGGAGGCAAATAATGATGAATCATTGAAGGCTCGCATCCAGCAATTGGAACATGAGCGTGACGAACTACTCAGAGAGCGCAACGAATTGCACAAAGATA
TAGAACAACTATGCATGCAGCAAGCCGGACCTGGCTTCCTCACTGTTGCAACTCGCTTGCATTTTCAGAGGACAGCTGGCTTGGAGCAGGAAATCGAGAA
TTTGAAAATAAAGTTAGCCGCCTCTACAAGAGATCATCTTAATCTTCAAGAAGAGCTTTCAGAGGCGTTCCGAATTAAAGCGCAATTGGCAGAGCTACAT
CAAGCGGAAGTTGCAAAGAATATTGAAGCAGAGAAACAGGTCAAATTTTTCCAAGGATGCGTAGCTGCTGCTTTTGCAGAACGCGATCAGGCCATTCTAG
AGGCTGAAAAGGCTAAGGAGGAAGAGGAGCTCGTATCACAGAAGTTTTTGCCAGTGCAGACTAGGTTGGAAGAGCTGACTTCAGATCTGCTTCAGCAGAA
GAGACGGAATGATGAATTGCTGCTTGATCTATCGAAGCAAGAAGAACAGAATGAAAACTTCAAAAAGGTTGTGGATAAGTTCTTTGCGATTAGACAGCAA
TCGTCTGAGGGATCTTCGGAGACAAGTTGGGATGACAAGTGTGAATGTCTAATACACGAACCAGCTGAAGTGTGGAGTTATAATGATCCTTCAACCTCTG
ATTACGTTAGTGCGTTGGAGGGCGAGCTGGAGAAATCGAGGAAATATGTCGATGATCTTCGAAACAAACTGCAAATGGGTATGGAAATAGAGAAACACTT
GGGAAAGAAAGTTCGTGAAGTCGAAAAGAACCAAATTCGTTTTGACAAAGTGGTCATGAGCGGGATGTTGGAGTTGCGCAACTGTCATTCTCAGCAAAGA
CTTGAGATTCTAAATTTACTTGCAGAAGAAAAATCTCAGCTCAAGTTGTTGGTTGATATGATTGAAGAGAAGATCAAAGGATTCGACTTGGCAAAACAGA
ATCTTGAGGTTCCTGAGGTCCTATCAAGCTCGGATGAAACTGAATGTCGCAATGTGCATGTTGTGACTGACACTTCATCAGTATACGAGAAAATTGAGAG
TTGCTCATCATCTAATGAAGCGCCTTTCGAAGAAGGCTATGCTTCCCAAGCCCTGAGGCAAGCATTGCAAGAAAAGGTTTCAACGCTATTGCTTTTATCT
CAGCAAGAAGAGAGACATTTACTGGAAAGGAATGTGAATGGAGCTCTTCAGAGAAAGATTGATGAACTTCAGAGAAACTTACTCCAAGTTAGTCATGAGA
AGGTTAAAGCTCTTATGGAGTTGGCACAGTTGAAACAAGAGCATCAACTTCTCCAAGAAAAACTAGCTGATGAAGCAAACCGAGGGCGAACCAATCATGA
AAGAGATGTAGGGGTGAAAAATGTGCTGAAGAAAACTTATCTGAGACGTTGGCTTGGCACGCTGGATATGAGTAGAACCGAAGTCGATCCGAGTAAAGAA
GGGGATCGAAAGTCGAACTCAATGGATTTCGCCAGAATGAAGATTGAAACAGCTACTCTTAGGGAAAGCATGGAGAGTATGGAACACTTGGTTATCTCGA
CTCGCAGGCTTCGCCTCACACTTGTCAAGATCAGTGAATCGCTGGCCAACGAAAACCCTGAAACTGGGATGTCTGGAGCTTTGGATAACATCATTCAGGA
AGCTAAGCTAGTGAAAACCGCGCTTGGGAGCTCGTTACCTATCAGTTGGTCAGCAGGCACGGATTCCGCACCAGGCAGCCCGAGATTTTCTGGTCAGCAA
ACGAGCCATTCGGATGCTACCGCAGATGAAAAGATGGATCCGGTATCTGCAGCTGGGTTCGAGATGGTTGAGCTTCTGATTCTTGCTGCTCATGCTCTGA
AAGAGAAATCAGCACCAGCAAATGTTGTTGAGAAATGA
AA sequence
>Lus10010456 pacid=23154092 polypeptide=Lus10010456 locus=Lus10010456.g ID=Lus10010456.BGIv1.0 annot-version=v1.0
MEANNDESLKARIQQLEHERDELLRERNELHKDIEQLCMQQAGPGFLTVATRLHFQRTAGLEQEIENLKIKLAASTRDHLNLQEELSEAFRIKAQLAELH
QAEVAKNIEAEKQVKFFQGCVAAAFAERDQAILEAEKAKEEEELVSQKFLPVQTRLEELTSDLLQQKRRNDELLLDLSKQEEQNENFKKVVDKFFAIRQQ
SSEGSSETSWDDKCECLIHEPAEVWSYNDPSTSDYVSALEGELEKSRKYVDDLRNKLQMGMEIEKHLGKKVREVEKNQIRFDKVVMSGMLELRNCHSQQR
LEILNLLAEEKSQLKLLVDMIEEKIKGFDLAKQNLEVPEVLSSSDETECRNVHVVTDTSSVYEKIESCSSSNEAPFEEGYASQALRQALQEKVSTLLLLS
QQEERHLLERNVNGALQRKIDELQRNLLQVSHEKVKALMELAQLKQEHQLLQEKLADEANRGRTNHERDVGVKNVLKKTYLRRWLGTLDMSRTEVDPSKE
GDRKSNSMDFARMKIETATLRESMESMEHLVISTRRLRLTLVKISESLANENPETGMSGALDNIIQEAKLVKTALGSSLPISWSAGTDSAPGSPRFSGQQ
TSHSDATADEKMDPVSAAGFEMVELLILAAHALKEKSAPANVVEK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G14680 MEE13 maternal effect embryo arrest ... Lus10010456
[exp]
0 1
AT1G44790 ChaC-like family protein (.1) Lus10003737
[exp]
4.6 0.9234
AT1G16350 Aldolase-type TIM barrel famil... Lus10036443
[exp]
6.0 0.9447
AT5G29000 GARP PHL1 PHR1-like 1, Homeodomain-like ... Lus10008197
[exp]
9.4 0.9323
AT1G15740 Leucine-rich repeat family pro... Lus10008036
[exp]
11.4 0.9389
AT3G15290 3-hydroxyacyl-CoA dehydrogenas... Lus10020828
[exp]
12.2 0.9403
AT4G19420 Pectinacetylesterase family pr... Lus10037269
[exp]
16.3 0.9271
AT2G14680 MEE13 maternal effect embryo arrest ... Lus10003821
[exp]
19.2 0.9383
AT2G43400 ETFQO electron-transfer flavoprotein... Lus10027045
[exp]
20.8 0.9387
AT1G57790 F-box family protein (.1) Lus10022706
[exp]
21.0 0.8854
AT3G01430 unknown protein Lus10014527
[exp]
23.2 0.9367

Lus10010456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.