Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56960 1079 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1076 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 945 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 721 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 709 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 543 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT2G26420 445 / 6e-146 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G60890 363 / 1e-113 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 359 / 3e-112 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G01190 225 / 6e-66 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003819 [exp] 1482 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 1263 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 1252 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10002734 [exp] 895 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 895 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 818 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 804 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 712 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 710 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036800 [exp] 1135 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 943 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 932 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G172800 [exp] 720 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 707 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 632 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 629 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 403 / 2e-128 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 360 / 2e-112 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 340 / 8e-105 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10010458 pacid=23154130 polypeptide=Lus10010458 locus=Lus10010458.g ID=Lus10010458.BGIv1.0 annot-version=v1.0 ATGAGCAAAGATTCACAGGGTGGTGGGGTGTTGAAGGCATGGGAAGCAACACTGAAGAAAACCCACGCGGCCAAGAAGCGTGCCACCAACAGCATCTTCG GCACCATCTCCTTAGCCAGCATGACGGCCAACGACGACAACGGCGAGAACAACAACAGCGAGGACAACGACAACGAAAACGAAGACGACAGCAGCAGCAC TAGCGGGGCGACAGAGTGTTACTACGCAGAGAAAGTGTTGCCAAACGGCGATTACTACACAGGGCAATGGTACGACAATTTCCCGAGCGGGAGAGGCAAG TATTTGTGGAACGACGGGTGCATGTACGTCGGAGAGTGGTACAAGGGGAAGACGATGGGGAGAGGGAGGTTCAGCTGGCCGTCTGGAGCGGTCTACGAAG GGGAGTTCAAGAGTGGGTATATGGATGGGAATGGGACCTACTCGGCGGTCAATGGAAACGTTTATAGAGGCCAGTGGGTTATGAATTTGAAGCATGGCCA TGGCATGAAGCAGTTTGCTAAGGGTGATTGGTACGAAGGCGATTGGAGACGAGGCTTACAAGAAGGGCAAGGAAAATACCAATGGAAAGCACCGGCAAAC TACTACGTCGGCGAGTGGAAGAACGGTACCATCTGCGGCAAAGGCACGTTCATGTGGGAGAACGGAACCCGCTACGATGGCCAGTGGGAAGACAGCGTAC CAAAAGGTAACGGCACGTTCACCTGGCCAGACGGCAGCTTCTACGTAGGCAACTGGAGCAAAGACCCCGCGGAGCAGAACGGGAGCTACTACCCTTCCAA GTCACCCTCCTCGTCAGCCAGCCAGCAGGATTGGGACCCACAGAGCGTGTACACCACGTACCTCGCAGACTGCGAGATATGCCCCTGCGAGAAGGTGTCC ATCCTACCGTCGCAGAAGAAGCTGGCCGTGTGGAACTCATCAAAGCACGGCTCCGAGAAGGGGCGGCGGCTGTCGGTTGACGGCAGGGCCAGCGTCGGGA ACGAGAGGGCGTTCGAGAGGATGAACATGTGGGGCGACAGCGATCATGATTCGGGCCGCAGCGGCTCCGCCGTGATGGATATGGATGCGGAGTTGCTAGG GGTGGATCAGACGTCGGCGGAGGAATTAGGAAATATGAATTATGCTGCGAGTCTTAATAAAGGGCTGCCTATGAAAGTGCCTAAAGTTGCTAAACGACAA GGGGAGACCATTTGCAAAGGGCATAAGAACTACGAGCTTATGCTTAATCTACAGCTAGGAATCAGGCATTCAGTTGGACGACCGGGACCAGCAGCATCAC TTGATCTGAAGGCATCAGCTTTCGACCCGAACGAGAAGATATGGACAAGATTCCCACCCGAAGGAAGTAAGCACACCCCACCCCATGGTTCTTCCGAGTT CAAGTGGAAGGACTATTGCCCCTTAGTTTTCAGGTCGCTAAGGAAGTTGTTCAAAGTTGACCCGGCTGACTACATGCTGTCGATATGTGGGGACGAGGCG CTCCGTGAGCTCTCGTCTCCAGGAAAGAGTGGTAGTTTCTTTTACTTAACTAACGATGATCGCTATATGATCAAAACGATGAAGAAATCAGAAGTCAAAG TGCTTATAAGGATGCTTGCTGCCTATTACAATCATTTCAGATCCTATGAGAACACCTTAATCATCAAATTTTTTGGCTTACATTGTGTGAAATTAGCTGG ACCTGCACAAAAGAAGGTACGGTTCATAATAATGGGAAACCTGTTTGTTTCGGAGTACGCAATCCACAGGCGGTTTGACCTAAAGGGTTCGTCGTTGGGT CGAATCACAGACAAGCCAGAGTCCGAGATCGACTCCAACACCATTCTTAAAGACCTGGACTTGAACTTCATTTTCAAGTTACAGAAGGCTTGGTTTCAAG AATTTTGCAGGCAAGTAGATAGAGATTGTGAGTTGCTTGAGCAGGAGAGGATTATGGACTACAGTCTTCTAGTCGGCATTCATTTCAAAGAAGTATCGCC TATTCAGGAAATCATTCCCTGTAAAGCCGAACCTCCTTCGGCTGAAGTTGAAACGGAAGAAGGACCTCGACTTTCTAGAGCAGACATGGATCAACTTCAG CTAGACCCTACCAAATGTGCACGCATCAGGTTAGGAATGAACATGCCAGCAAGAGTCGAAAGAACAATAAGGAATAACGAGTGTGAGCTTCAACTGGTTG GAGAACCAACCGGGGAGTTCTACGAAATCGTAGTGACATTCGGTATCATCGACATTCTTCAAGACTATGACATTAGCAAGAAGCTTGAGCATGCTTATAA ATCCATCCAATACGACCCTACTTCTATCTCAGCCGTTGATCCTAAGCAATATTCGAGGAGATTCAGAGACTTCATTTTCAGAATCTTTGCAGAAGATTCG TAG
AA sequence Show only first row Show all	>Lus10010458 pacid=23154130 polypeptide=Lus10010458 locus=Lus10010458.g ID=Lus10010458.BGIv1.0 annot-version=v1.0 MSKDSQGGGVLKAWEATLKKTHAAKKRATNSIFGTISLASMTANDDNGENNNSEDNDNENEDDSSSTSGATECYYAEKVLPNGDYYTGQWYDNFPSGRGK YLWNDGCMYVGEWYKGKTMGRGRFSWPSGAVYEGEFKSGYMDGNGTYSAVNGNVYRGQWVMNLKHGHGMKQFAKGDWYEGDWRRGLQEGQGKYQWKAPAN YYVGEWKNGTICGKGTFMWENGTRYDGQWEDSVPKGNGTFTWPDGSFYVGNWSKDPAEQNGSYYPSKSPSSSASQQDWDPQSVYTTYLADCEICPCEKVS ILPSQKKLAVWNSSKHGSEKGRRLSVDGRASVGNERAFERMNMWGDSDHDSGRSGSAVMDMDAELLGVDQTSAEELGNMNYAASLNKGLPMKVPKVAKRQ GETICKGHKNYELMLNLQLGIRHSVGRPGPAASLDLKASAFDPNEKIWTRFPPEGSKHTPPHGSSEFKWKDYCPLVFRSLRKLFKVDPADYMLSICGDEA LRELSSPGKSGSFFYLTNDDRYMIKTMKKSEVKVLIRMLAAYYNHFRSYENTLIIKFFGLHCVKLAGPAQKKVRFIIMGNLFVSEYAIHRRFDLKGSSLG RITDKPESEIDSNTILKDLDLNFIFKLQKAWFQEFCRQVDRDCELLEQERIMDYSLLVGIHFKEVSPIQEIIPCKAEPPSAEVETEEGPRLSRADMDQLQ LDPTKCARIRLGMNMPARVERTIRNNECELQLVGEPTGEFYEIVVTFGIIDILQDYDISKKLEHAYKSIQYDPTSISAVDPKQYSRRFRDFIFRIFAEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	0	1
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	1.0	0.8180
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	2.4	0.7414
AT4G02160			unknown protein		Lus10010018 [exp]	8.1	0.7328
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	13.6	0.7200
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	13.9	0.7054
					Lus10015336 [exp]	14.1	0.7287
AT2G38870			Serine protease inhibitor, pot...		Lus10024370 [exp]	17.3	0.6846
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	18.2	0.6766
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	22.4	0.6287
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	24.5	0.6211

Compare expression of checked genes

Lus10010458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.