Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22260 336 / 4e-118 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 280 / 2e-96 Cysteine proteinases superfamily protein (.1) AT5G04250 222 / 1e-71 Cysteine proteinases superfamily protein (.1.2) AT5G03330 211 / 2e-67 Cysteine proteinases superfamily protein (.1.2) AT2G39320 92 / 6e-23 Cysteine proteinases superfamily protein (.1) AT5G67170 69 / 1e-13 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 57 / 2e-09 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003816 [exp] 378 / 6e-135 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 350 / 4e-123 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10038708 [exp] 216 / 4e-69 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 214 / 9e-69 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 210 / 9e-67 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 202 / 5e-64 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 202 / 6e-64 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 202 / 6e-64 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 189 / 3e-59 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021700 [exp] 360 / 6e-128 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G019700 [exp] 347 / 8e-123 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 288 / 1e-99 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.016G094700 [exp] 223 / 3e-72 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 223 / 5e-72 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 212 / 2e-67 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 207 / 8e-66 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.008G036900 [exp] 189 / 7e-61 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 74 / 4e-15 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 60 / 2e-10 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10010459 pacid=23154118 polypeptide=Lus10010459 locus=Lus10010459.g ID=Lus10010459.BGIv1.0 annot-version=v1.0 ATGACCGAAAGCCACAGCAACGCGAGTGCGAGCTCGACCTCTAGCTTTAGTAGCAGCATTGCCGATACAGAGGATGATCAGGTCATTGCAAGCATCTTAG CTGAAGAAGAAAAGGCTAACGGTGGTAGACAGCTTGGAAAGAGGCTCTCTCATCTGGATTCTATACCTCACACTCTTCGGGTTAATGGTGAGATTCCAGA TTTGAACGATGCAACCTTAGACCACGTACGGCTTTCTGAAAGGTTGAAGACTTATGGATTAGCGGAACTGCATATGGAGGGCGATGGGAACTGTCAGTTT CGAGCACTGGCAGACCAGTTGTTCAGAAGTCCAGATTATCACAAACATGTCAGGAAGCAAGTGGTGAAGCAGCTAAAGCAATTCAGAAAGTTTTACGAAA GCCATGTCCCAATGAAGTACAAAAGCTACATTAGAAAGATGAAAAAATCAGGAGAGTGGGGCGATCACGTGACGCTACAAGCTGCTGCAGATCGATTTGA AGCCAAGATTTGCTTAGTTACATCTTTCCGCGACACTTGCTACATCGAGATCCGGCCCAAGGACAAGCCTCCCGGGAGAGAGATCTGGCTGAGCTTTTGG AGCGAAGTTCACTATAACTCGCTATATGCAATTGGAGATGTTCCCACCAGAGTGCCAAGGAAAAGGCATTGGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10010459 pacid=23154118 polypeptide=Lus10010459 locus=Lus10010459.g ID=Lus10010459.BGIv1.0 annot-version=v1.0 MTESHSNASASSTSSFSSSIADTEDDQVIASILAEEEKANGGRQLGKRLSHLDSIPHTLRVNGEIPDLNDATLDHVRLSERLKTYGLAELHMEGDGNCQF RALADQLFRSPDYHKHVRKQVVKQLKQFRKFYESHVPMKYKSYIRKMKKSGEWGDHVTLQAAADRFEAKICLVTSFRDTCYIEIRPKDKPPGREIWLSFW SEVHYNSLYAIGDVPTRVPRKRHWLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	6.5	0.9050
AT2G32970			unknown protein		Lus10035309 [exp]	7.2	0.8966
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	7.6	0.8983
AT1G60995			unknown protein		Lus10033791 [exp]	8.7	0.8902
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	9.2	0.8901
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10031431 [exp]	11.8	0.8628
AT4G37440			unknown protein		Lus10001409 [exp]	15.0	0.8848
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	16.4	0.8725
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	16.6	0.8975
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	25.7	0.8536

Compare expression of checked genes

Lus10010459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.