Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03490 237 / 1e-78 AtPEX19-1, PEX19-1 peroxin 19-1 (.1) AT5G17550 235 / 6e-78 AtPEX19-2, PEX19-2, PEROXIN19-2 ,PEROXIN 19-2 peroxin 19-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003813 [exp] 355 / 3e-125 AT3G03490 296 / 5e-102 peroxin 19-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077000 [exp] 262 / 2e-88 AT5G17550 319 / 8e-111 peroxin 19-2 (.1) Potri.001G157900 [exp] 248 / 9e-83 AT5G17550 288 / 7e-99 peroxin 19-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04614 [flax] [poplar] Pex19 Pex19 protein family
Representative CDS sequence Show only first row Show all	>Lus10010463 pacid=23154067 polypeptide=Lus10010463 locus=Lus10010463.g ID=Lus10010463.BGIv1.0 annot-version=v1.0 ATGAGAAACAGGGGGGCGGGGAGCGGAAGTTGCAAGGAGAGGGTGGGGTGTAATCGACAGCGACTACAAGGTGCTCTCGATGATTTCCAGACTCTCAACC TAGCGCAACAGTCCTCTCAAAGCGATGGTGGTGGTGGTTCTTCAGCTGGGGTTCAGGGTTTAGGAATGGGGTTGCCGGATTTGAAGAGCAAGAAGAAAGG GAAAAAGGCGGCTGCGGCGGCGGATGATCACGTGGCGGAGGCGCTTGATAAGCTGAGGGAGCAGACTAAGGAGGCTGTGAAAGGATTGGAGTCTGTTAAA GGTGATGATAAGGATGCTTTGCTGGAGGACTGGGTTAAGCAGTTCGAGGAGCTTGCATCCACCCAGGACATGGGATCTCTAGTGGAGTCCATGATGCAGC AGCTGCTGTCCAAGGAGATCCTTCACGAACCCATGAAGGAAATCGAAGGGCGATACCCGACATGGTTGAAAGACCACGAAACGACTCTAAGCGAAGAAGA ATACACACGTTACTCCAAACAGTTTGAACTCATAAAGGTTCTCAACGAGGTTTACGAGAACGATCCAAACAACTACACCAAGATCACGGATCTCATGCAG AAGATGCAAGAATGCGGGCAACCACCCGATGAAATTGTCCGGGAACTGGCACCTGATCTTGATTTGGCTACTCTTGGTCAAATAACACCCGAGATGCTTG ATTCCCAACAGAACTGTAGCATAATGTGA
AA sequence Show only first row Show all	>Lus10010463 pacid=23154067 polypeptide=Lus10010463 locus=Lus10010463.g ID=Lus10010463.BGIv1.0 annot-version=v1.0 MRNRGAGSGSCKERVGCNRQRLQGALDDFQTLNLAQQSSQSDGGGGSSAGVQGLGMGLPDLKSKKKGKKAAAAADDHVAEALDKLREQTKEAVKGLESVK GDDKDALLEDWVKQFEELASTQDMGSLVESMMQQLLSKEILHEPMKEIEGRYPTWLKDHETTLSEEEYTRYSKQFELIKVLNEVYENDPNNYTKITDLMQ KMQECGQPPDEIVRELAPDLDLATLGQITPEMLDSQQNCSIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	0	1
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	1.0	0.9006
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	1.4	0.8563
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	4.6	0.8208
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	8.1	0.8014
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	8.2	0.7549
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10029165 [exp]	12.0	0.7571
AT1G76200			unknown protein		Lus10016001 [exp]	12.2	0.8087
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	14.0	0.7337
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	14.3	0.7844
					Lus10007413 [exp]	17.3	0.7493

Compare expression of checked genes

Lus10010463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.