Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32240 714 / 0 unknown protein AT1G05320 186 / 4e-48 unknown protein AT5G11390 44 / 0.0008 WIT1 WPP domain-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003812 [exp] 2017 / 0 AT2G32240 834 / 0.0 unknown protein Lus10034351 [exp] 51 / 5e-06 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1) Lus10005102 [exp] 50 / 1e-05 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018700 [exp] 1211 / 0 AT2G32240 830 / 0.0 unknown protein Potri.006G021200 [exp] 1189 / 0 AT2G32240 838 / 0.0 unknown protein Potri.017G106400 [exp] 46 / 0.0002 AT5G11390 510 / 2e-172 WPP domain-interacting protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010464 pacid=23154141 polypeptide=Lus10010464 locus=Lus10010464.g ID=Lus10010464.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAGACGCAAGTGAGTTCAGAAGTCCCGGTGGTCACGGTGCTAGAAGCTGGCAGTAAAGCTGATATTGTTGAGGTCTCAAATGGAGACTTGC CACAAGAAGATAAACCACAAAAGAGAGAGGAAGATGAAACAGATGGAGAATTCATCAAAATAGAGAGAGAATCATTAGACGTTAAAGATGGATCTCATGC ACCCATTGCAGCTCCTTCTAAGGATGACAAGCCATCAGTTAGTGAGAAATCTGCAAGCAGCTTGACCAGAGAATCGCTAGAAGCCGAGGAGAAGATCAAG GAACTCAAATTGGAATTGGAGAGAGTAGCTGAGGCATTGAAGCAGTCTGAATCCGAAAATGCTGCGGTCAAGAATGAAGCTCTACTCGCGAGTGAGAAAT TGGAAGGATCCGAAACCAAATACAAAGAGCTTGAACTTGATCACAAGAAGTTGCGGGAGCAGGTCACTGAAGCCAAGGAGAGATATGCTTCACAGCTCAA AAGCTTGCAGGAGGCTCTTGAAGCACAAGAGCTAAAGCACAAGGAATTGGTTGAGGTTAAAGAAGCATTTGATTCTCTCAACTTGGACCTTGATAGCTCA CGAAAGAGAATCGGGGAGCTGGAAAGTGGGCTTCAACAATCTATTGATGATGCAAAGAAGTTTGAGGAACTGCATAAGCAAAGCGGTTCTGATGCCGAGT CCCATTCTCAAAGAGCTTCCGAATTCGAGAAGCTCCTGGAGGCTGCTAAGCTTAGTGCTAAAGAAATGGAAGATCAGATGGGTACACTTAAGGAAGAGGT GTCAGGTCTTTATGCAAAGATTTCGGAGAACCAGAAAGTTGAAGAAGCTCTTCAGAATACCACAAGTGAGCTCTCCAAAGTTCAAGAAGAGTTCGCTCTT TCAAAGTCACAACTCCTGGACTTAGAACAAAGTCTTTCCTCGAAGGAAGTTTTTCTAAGCAAACTGACTGAAGAACTGGAATTGACAAAAGTTTCGGAAT CGAAGCTGAAGGAAGACTTCTCAGCTCTTGAGAATGCACTGGCTTTGACTAAGGAAGATGCACAGGCTAAGGCTTCTGAGTTAGAAAGCATCAAGCTGAA GATTCAGGAGGAGATTGATGCGAGACAGACCATTGAATCTGGACTAAAGGATCAGGAAGCACAGGTTTCGGCATTACAAGAAGACCTGTCTAAGATTGTA AAGGAAAAGGAAGATCTTAAGTCAACTGTGGCTGATCTCACCAGCGATGCAGCACAGGCTAAACAGCTTTGCAGTGACCTCGAGGAAAAATTGAAGCTCT CAGCCGAAAATTTCTCCAAAACTGATTCCCTTCTCTCTGAATCACTGGCGAATAATGCCGAGCTTGAACAGAAGTTGAAATCCCTTGAAGAGAATCATAC TGAAGCTGGAATTGTTGCTGCAACTGCTACTCAGAAAAGTTTGGAGCTTGAGGACTTGATAAAGGCTTCAAACGAAGCAGCATCCGAGGCTCAATCCCAG CTCAGAGAGCTCGAGACACGACTCATTGCATCAGAACAGAAGAATGTGGAGCTCGATCAGCAGTTGAATTTGATTCAACTGAAGAATCGTGATGCTGAGA GGGAAATCGGAGAGCTTTCAGACAAAGTGTCTGAACTCAGTTCGGGACTGAGGGAGGCAGAGGAAGAAAAGAAAATCTTGGCTTGTCAGATACAGGAATA CCAAGAAAAGGTTATCCATCTCGAAACTGAATCATCGTCTCGGCACCTGGAGCTGGAAGACAAGCTGAAGAAAGCCACAGAAAAACATGTCGAGATTGAG AACCGTGCGACTGAGACTCATGAAAGAAGCCTTGAACTCGAAAACTTGATTCACAGTTCCCGTTCCAAATCTGAGGATGCTGAGAAGAAGGTTGGCGAGC TGGAGCTATTGCTTGAAGCTGAGAAGTACAGGATTCAGGAACTTGAAGAGCAAATCAACACGCTAGAAAAGAAATGTATCGAGGCGGAAGGCGACTCAGA TAAGTACAAGCTAAAGGTTTCAGAACTCTCATCTGAACTTGAAGCATTCCAAATGAAGGCATCGAGCCTTGAAATCGCAGTTCAAATGGCTACTGACAAA GAGAAAGAGTTGACAGAAAGCTTAAACTTGGCAGCAGAAGAGAAGAAAAGGCTAGAAGATGCATCAAGCTCTGCAAATGAGAAGCTTAGCGAGGCTGAGA ATCTTGTTGAGGTATTGCGTAACGAGATAACCGTTACGCAGGAGAAGTTGCAGAGCATCGAGAGTGATCTGACCACTGCTGGGTTGAAAGAATCCGACAT AATGACTAAGCTCAAAGATGCAGAGGAGAAACTTGTGCAGCAAGAAGTGATGTTCGGTGAAGTTTCAGCCAGAAAGACCGAGCTTGAATCATTGACAGAA TCCCTTTCTAGAGATTCGGAACTGAAACTTCAGGAAGCCATTGCAAGCTTCAGCGACAAGGACTCTGAGGCGAAGTCCCTGTTTGAGAAGCTACAAAAGC TTGAGGAACAAGTTAAGGCATACCAAACCCAGCTGGCCGAAGTAACCGAGAAATCCACTTCATTGAAAGAAGAGCTGGATTCCTCATTCATGAAAGTGAC ATCATTCGAAACCGAAAATGAAGAACTCAATAGGAAGATCTTGGATGCAGAGAGCAAAGTCTCGAATGCTTCGTCTGATAACCAGCAACTTATTGAGACA AATACCGAGTTGCAGATCAAGGTCGAGGAACTCAAGCAGTTGCTGGAATCAGCTCTGTCGGAGAAGGACACCACAAGCCAACAGCTTGCTTCTCATACTA CTGCCATCGCCGAAATAACAGATAAGCATTCGAGAGCAATCGAGCTTCATTCTGCTGCCGAGACAAACTACCAAGAGGCAGTTCAGAGGCTTGCTGAGAA AGAATCAAAAGTTAAAGAACTGAATGAGAAGCTCAATTCTCTTGAGGTTCAGGTGAAAGTCCACGAAGAACAAGCCTCAGAAGCACAGGGAAGCGCGAAA GCTACGAAGATTCAGCTAGAGGAAGCACTCCAAAAGCTGCAACATCTAGAAGTGGTCGTTGAGGAGCTTCAAGCGAAGTCCGGTCATTTGGAAAAGGAGA GTGGAGGACTAGCCGAGGCTAATTTGAAGCTTACGGAAGAGTTGGCTTCGTACGAGTCCAAACTAAGTGACTTGCAATCCAAGCTTTCTGCAGCCCTCTC AGAGAAAGATGGAGCTGTAGAACAGCTGCACTCTTCGAAGAAAACCGTGGACTATCTAACGCAGCAGCTCTCTGCAGAAGGAGAGAAGCTGCAATCTCAG ATTTCCAAGGTCATGGAAGAGAACAGCCAGCTCAATGAGGTGCATCAAAGCACTAAGAGCGAACTTCAAGCGATCATAGTTCAGCTCACGGAGCAGTTGA AAGAGCAGAAGGAGAAGGAAGATGCCGCGAATCTGTCACTGCAAACCCATCTAAAGGAGCTCGAGGAACAGAAAGGAGCAAGTTCTGGCAAAGAGCTGGA AAGCGAAGCAGCAGTAAAGAAAGCCCTCGAAAGTCTGGAAGCCAAGAACAAAGAAGTCGCTAATCTTGAGAAGCAAGTCAAAGACCTGCAGCTGGCCGCA GTTAAATCTGTCGAAAAGGATGGAGCAGAGATCAAATCAAGAGACATTGGAGCCAGCCCTCCTACTACTCCTTCAAAGAGGAAGAGCAAGAAGAAGCTTG AAGCTCAAGCTTCATCAGCATCTGCAGAGACGACCCTTACACGAACTGCTTCCACAGAGGGTCCCACAGGTGCCATGAACATCAAGCTCATCCTTGGAGT AGCCATCGTATCGATTGTCGTGGGTCTAGTTCTTGGGAAGATCTACTAG
AA sequence Show only first row Show all	>Lus10010464 pacid=23154141 polypeptide=Lus10010464 locus=Lus10010464.g ID=Lus10010464.BGIv1.0 annot-version=v1.0 MEQETQVSSEVPVVTVLEAGSKADIVEVSNGDLPQEDKPQKREEDETDGEFIKIERESLDVKDGSHAPIAAPSKDDKPSVSEKSASSLTRESLEAEEKIK ELKLELERVAEALKQSESENAAVKNEALLASEKLEGSETKYKELELDHKKLREQVTEAKERYASQLKSLQEALEAQELKHKELVEVKEAFDSLNLDLDSS RKRIGELESGLQQSIDDAKKFEELHKQSGSDAESHSQRASEFEKLLEAAKLSAKEMEDQMGTLKEEVSGLYAKISENQKVEEALQNTTSELSKVQEEFAL SKSQLLDLEQSLSSKEVFLSKLTEELELTKVSESKLKEDFSALENALALTKEDAQAKASELESIKLKIQEEIDARQTIESGLKDQEAQVSALQEDLSKIV KEKEDLKSTVADLTSDAAQAKQLCSDLEEKLKLSAENFSKTDSLLSESLANNAELEQKLKSLEENHTEAGIVAATATQKSLELEDLIKASNEAASEAQSQ LRELETRLIASEQKNVELDQQLNLIQLKNRDAEREIGELSDKVSELSSGLREAEEEKKILACQIQEYQEKVIHLETESSSRHLELEDKLKKATEKHVEIE NRATETHERSLELENLIHSSRSKSEDAEKKVGELELLLEAEKYRIQELEEQINTLEKKCIEAEGDSDKYKLKVSELSSELEAFQMKASSLEIAVQMATDK EKELTESLNLAAEEKKRLEDASSSANEKLSEAENLVEVLRNEITVTQEKLQSIESDLTTAGLKESDIMTKLKDAEEKLVQQEVMFGEVSARKTELESLTE SLSRDSELKLQEAIASFSDKDSEAKSLFEKLQKLEEQVKAYQTQLAEVTEKSTSLKEELDSSFMKVTSFETENEELNRKILDAESKVSNASSDNQQLIET NTELQIKVEELKQLLESALSEKDTTSQQLASHTTAIAEITDKHSRAIELHSAAETNYQEAVQRLAEKESKVKELNEKLNSLEVQVKVHEEQASEAQGSAK ATKIQLEEALQKLQHLEVVVEELQAKSGHLEKESGGLAEANLKLTEELASYESKLSDLQSKLSAALSEKDGAVEQLHSSKKTVDYLTQQLSAEGEKLQSQ ISKVMEENSQLNEVHQSTKSELQAIIVQLTEQLKEQKEKEDAANLSLQTHLKELEEQKGASSGKELESEAAVKKALESLEAKNKEVANLEKQVKDLQLAA VKSVEKDGAEIKSRDIGASPPTTPSKRKSKKKLEAQASSASAETTLTRTASTEGPTGAMNIKLILGVAIVSIVVGLVLGKIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32240			unknown protein		Lus10010464 [exp]	0	1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	3.7	0.8976
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	4.2	0.9074
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	5.7	0.9247
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10018921 [exp]	6.7	0.8968
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	9.6	0.9049
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	9.7	0.9091
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10033239 [exp]	18.8	0.9016
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	22.3	0.8771
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	23.5	0.8995
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	27.7	0.8642

Compare expression of checked genes

Lus10010464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.