Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010466 pacid=23154144 polypeptide=Lus10010466 locus=Lus10010466.g ID=Lus10010466.BGIv1.0 annot-version=v1.0 ATGGAAAATTTTCAGAAACTGTGGGAGAACACCCAGTTTCGGGACCCCGATCCCGAGCATGTGGTAGATCCGTCAGTAGCGCAAAATGCTATAAACAGTT TATGCAGTTCGGTAAAGATACAGATCTCTTTCGATGAGAAAATTCGTCTGGGTCTCACCATGGTGCAAGCAGCTGTGAGAGATGTACACCCTGCTGCCGA CCGTTCTTCTCTGCAAGCAGACCCTTGGTCTGCCGTCCATTATCTTGCCAACCGATTCAGAATGGCCGTGTCCTTGTATAACATCCAGCTGCGTAAAATG GCTGCTGAATTGACTCTGCATACTGCTGCACTGAAAAGATGTATTCAAAGATACTCGTCGGACCTCGTTAACCACCCCTCCACCTGGAAGCCTAGGATAG CCAGAAATATTGTCCTGCTGCCCCTACCGGCGACCAAGGTTGAGGAGATGTCGGACGCTCCAGACGTGGTTGCGTAA
AA sequence Show only first row Show all	>Lus10010466 pacid=23154144 polypeptide=Lus10010466 locus=Lus10010466.g ID=Lus10010466.BGIv1.0 annot-version=v1.0 MENFQKLWENTQFRDPDPEHVVDPSVAQNAINSLCSSVKIQISFDEKIRLGLTMVQAAVRDVHPAADRSSLQADPWSAVHYLANRFRMAVSLYNIQLRKM AAELTLHTAALKRCIQRYSSDLVNHPSTWKPRIARNIVLLPLPATKVEEMSDAPDVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010466 [exp]	0	1
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	23.4	0.6303
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	34.0	0.5561
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	65.7	0.5342
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	78.6	0.5245
AT3G19340			Protein of unknown function (D...		Lus10041510 [exp]	143.0	0.5030
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	205.0	0.4949
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	252.6	0.4835

Compare expression of checked genes

Lus10010466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.