Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05310 489 / 2e-173 Pectin lyase-like superfamily protein (.1) AT2G36710 334 / 5e-112 Pectin lyase-like superfamily protein (.1) AT2G36700 319 / 3e-107 Pectin lyase-like superfamily protein (.1) AT5G19730 307 / 8e-102 Pectin lyase-like superfamily protein (.1) AT5G47500 280 / 2e-91 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G55590 251 / 4e-80 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G07410 250 / 7e-80 Pectin lyase-like superfamily protein (.1) AT1G69940 250 / 7e-80 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G61680 249 / 1e-79 Pectin lyase-like superfamily protein (.1) AT5G07430 246 / 4e-78 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027737 [exp] 345 / 3e-116 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 302 / 1e-99 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 285 / 6e-94 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 284 / 9e-93 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 283 / 1e-92 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 282 / 7e-92 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 267 / 2e-86 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 263 / 5e-85 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 257 / 2e-82 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017700 [exp] 531 / 0 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 356 / 2e-120 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 302 / 6e-100 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 282 / 4e-92 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 276 / 6e-90 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 275 / 3e-89 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 258 / 5e-83 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 258 / 5e-83 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 258 / 5e-83 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114900 [exp] 258 / 5e-83 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10010470 pacid=23154073 polypeptide=Lus10010470 locus=Lus10010470.g ID=Lus10010470.BGIv1.0 annot-version=v1.0 ATGGCCAACTTCAAATTCCAAAACGTTTCTCTCGCCGTCTTAGTCGCCGTTTTTGCCTTCTTGGCGTCCACCGTCTTTGTCGCTAATAGCAACATCAGCG ACGGAAAATTCCCATTGGCGACGACTAATCTCAAAGAGCTGGTCCTCAATCAACTAGTTCAAATTGTGAACTCTGTTACATCATTTGATCGTTTCTTTCT CCCGGCCATCACCCGCCGCTGGAGGAAGCACCGACCGGCGGACAAAGGAGGGAAAGGGAAGCCGGTAGTGAACATTTGCGACGACTTCCCACCGGACATT CCACCTCCCGATACCAGCACTACAACCACAATTTGCGTCGATCGAAACGGGTGCTGCAATTTCACGACGGTACAAGCCGCCGTCGATTCTGTTCCGATCA TGAGCTTCAAGAGGAACGTTATTTGGATTAACTCCGGGATTTACTATGAGAAAGTCACGGTACCGAGAAACAAACCTAACATAACGTTTCAAGGTCAAGG CTATACATCCACCGCCATTGTATGGAACGACACGGCTAAGTCTGCTAATGGAACATTTTACTGTGCGTCGGTCCAAGTCTTCTCCGATAGGTTCATTGCC AACAACATAAGCTTCATGAATGTTGCGCCGATTCCAGGACCCGGGGATGTTGGAGCACAGGCTGTGGCGACACGAGTCGCTGGAGATCAAGCGGTGTTCT CAAATTGTGGCTTCTTTGGAGCACAAGACACTCTCCACGACGACAAGGGTCGACATTTGTACAAGGATTGCTACATCCAAGGGTCCATTGATTTCATCTT TGGCAATGCTAGGTCCCTCTACCAGAATTGTCAATTGATATCGATGGCGAATCCAGTGGCACCGGGGTTTAGATCAATAAACGGGGCGGTAACGGCTCAT GGAAGAGCATCCAAGGAAGAAAATACGGGCTTTGTTTTTGTGAATTGTAGTTTGGGAGGTACAGGGAGGATTTGGTTAGGACGAGCTTGGCGACCGTTCT CTCGCGTTGTTTTCGCCTACACAACTATGACAGATATCGTTGCCCCGGAGGGATGGAACGATTTCAACGATCCTTCGAGAGATCAGACTATCTTCTACGG AGAGTACAATTGCAGCGGACCGGGAGCCGCAACGAACCAAAGGGCTCCTTATGTACAAAGGCTCAATGATACATTGGCTGCTCCTTTCCTTGACCTACCT TTCATCGATGGAGATCAATGGTTGCCAAGCTTGTTGACCTAA
AA sequence Show only first row Show all	>Lus10010470 pacid=23154073 polypeptide=Lus10010470 locus=Lus10010470.g ID=Lus10010470.BGIv1.0 annot-version=v1.0 MANFKFQNVSLAVLVAVFAFLASTVFVANSNISDGKFPLATTNLKELVLNQLVQIVNSVTSFDRFFLPAITRRWRKHRPADKGGKGKPVVNICDDFPPDI PPPDTSTTTTICVDRNGCCNFTTVQAAVDSVPIMSFKRNVIWINSGIYYEKVTVPRNKPNITFQGQGYTSTAIVWNDTAKSANGTFYCASVQVFSDRFIA NNISFMNVAPIPGPGDVGAQAVATRVAGDQAVFSNCGFFGAQDTLHDDKGRHLYKDCYIQGSIDFIFGNARSLYQNCQLISMANPVAPGFRSINGAVTAH GRASKEENTGFVFVNCSLGGTGRIWLGRAWRPFSRVVFAYTTMTDIVAPEGWNDFNDPSRDQTIFYGEYNCSGPGAATNQRAPYVQRLNDTLAAPFLDLP FIDGDQWLPSLLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	1.0	0.9785
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	4.2	0.9775
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	4.9	0.9754
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	5.2	0.9771
AT5G57510			unknown protein		Lus10026228 [exp]	5.3	0.9510
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	9.5	0.9750
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	9.5	0.9651
AT3G12955			SAUR-like auxin-responsive pro...		Lus10031790 [exp]	9.8	0.9462
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	9.8	0.9631
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	11.0	0.9718

Compare expression of checked genes

Lus10010470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.