Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 412 / 1e-144 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 402 / 2e-141 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 113 / 3e-28 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003808 [exp] 556 / 0 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 420 / 9e-148 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 376 / 2e-131 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 373 / 4e-130 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 239 / 6e-78 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 213 / 4e-68 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10027604 [exp] 117 / 3e-29 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 116 / 4e-29 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10021592 [exp] 107 / 9e-26 AT2G38670 505 / 4e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017500 [exp] 447 / 1e-158 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 432 / 5e-153 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 394 / 2e-138 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 394 / 4e-138 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 117 / 2e-29 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 115 / 6e-29 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 110 / 6e-27 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 110 / 7e-27 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10010471 pacid=23154095 polypeptide=Lus10010471 locus=Lus10010471.g ID=Lus10010471.BGIv1.0 annot-version=v1.0 ATGGACGTCGAAGTGCAGAAAACCAACGGGAATCTCGTCCCTTCTTCCTCTCCTGCTGCTCAATCGGGAAACCGCAGTTCCGATCAGCCACCGCTTCCTT CCGACAGGCCTGTCCGCGTGTACGCTGACGGGATCTACGATCTCTTCCACTTCGGACATGCTAGGTCCCTCGAACAGGCCAAGAAATCGTTTCCGAATGC GTACTTGCTAGTTGGATGCTGTAACGATGAAATTACGCATACGTTCAAGGGGAAGACGGTGATGACGGAAGATGAGAGATATGAATCGCTTCGTCACTGC AAATGGGTGGATGAAGTGATTACTGATGCACCTTGGGTGATTAACCAGGAGTTTCTGGATAAACACAAGATTGATTATGTTGCTCATGACGCACTACCAT ATGCAGATGCAAGTGGAGTTGGGAAGGATGTTTATGAGTTTGTGAAAAAAGTTGGGAGGTTCAAAGAAACAAAAAGAACTGATGGGATCTCTACATCCGA TATCATAATGAGGATTCTCAAAGACTACAATCAGTATGTCACACGTAATTTGGATCGCGGGTACACGAGGAAGGAACTCGGTGTCAGCTATGTTAAGGAA AAGCGACTGAGGGTCAACATGAGGCTGAAGAAACTACAAGAGAAAGTAAAAGAGCAACAAGAGAAAGTTGGAGAAAAGATTCAAACTGTGACAATGCATC GTAACGAATGGGTCGACAACGCTGATCGTTGGGTTGCTGGTTTCCTTGAGATGTTCGAGGAAGGTTGCCATAAAATGGGCACAGCCATTCGAGATCGAAT CCAAGAGCGGCTGATGGGCCAGCAGGCAAAGCGGATGCTTCGAAACAGTAAGGAAGGCGAGGAAGATGGCCAGGAAGAATACTACGATGATGACTTCGAC GAAGATGATTATGAGTACGAGTACGTAGATGGGGAGGAAGAGTATTACGACGATGAGCAACAACCACAACAACATTCGAGTCAGAAGGATGAGAAAGCTG TCGAAGGAAACCGATGA
AA sequence Show only first row Show all	>Lus10010471 pacid=23154095 polypeptide=Lus10010471 locus=Lus10010471.g ID=Lus10010471.BGIv1.0 annot-version=v1.0 MDVEVQKTNGNLVPSSSPAAQSGNRSSDQPPLPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNAYLLVGCCNDEITHTFKGKTVMTEDERYESLRHC KWVDEVITDAPWVINQEFLDKHKIDYVAHDALPYADASGVGKDVYEFVKKVGRFKETKRTDGISTSDIIMRILKDYNQYVTRNLDRGYTRKELGVSYVKE KRLRVNMRLKKLQEKVKEQQEKVGEKIQTVTMHRNEWVDNADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGQQAKRMLRNSKEGEEDGQEEYYDDDFD EDDYEYEYVDGEEEYYDDEQQPQQHSSQKDEKAVEGNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10010471 [exp]	0	1
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Lus10008148 [exp]	3.5	0.7499
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10005611 [exp]	13.6	0.7289
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	15.2	0.7660
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	15.5	0.7130
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	15.7	0.7738
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031275 [exp]	19.3	0.7126
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020705 [exp]	30.9	0.7376
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	33.0	0.7144
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004361 [exp]	34.6	0.6985
AT4G21215			unknown protein		Lus10007639 [exp]	38.9	0.7285

Compare expression of checked genes

Lus10010471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.