Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 1041 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 881 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 763 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 487 / 8e-159 Leucine-rich repeat protein kinase family protein (.1) AT1G23540 244 / 2e-69 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 240 / 2e-68 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24790 229 / 9e-68 Protein kinase superfamily protein (.1) AT1G68690 238 / 1e-67 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT2G20300 238 / 2e-67 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G16000 236 / 2e-67 NIK1 NSP-interacting kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003807 [exp] 1465 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 1128 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1123 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 870 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 863 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 653 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 603 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 541 / 1e-179 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023220 [exp] 420 / 1e-132 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134900 [exp] 1071 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1062 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 916 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 884 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 691 / 0 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 642 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 501 / 6e-164 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 480 / 7e-156 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 471 / 2e-152 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.005G049200 [exp] 467 / 3e-151 AT3G23750 589 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010472 pacid=23154091 polypeptide=Lus10010472 locus=Lus10010472.g ID=Lus10010472.BGIv1.0 annot-version=v1.0 ATGATCTCTTCCAACCAGTTTGACTCAATTCCACCCGATTTCTTCCACGGCATGTCGTCTTTACAGTCCGTGGAGATGGATAATAACCCTCTTTCCCCCT GGGAGTTCCCGGAGAGCTTGAGGAACGCTTCTTCTTTGCAGAAGTTCTCTGCCAACTCTGTAAACCTAACTGGTTCGATCCCTGATTTTTTCGGTTCGGA TGTTTTCCCTGGCTTGGTTACTCTGCATTTGGCGATTAACGGTCTGGAAGGTACTCTGCCTGCTAGCTTTGGTAGATCGGATATTCAGTCGTTGTGGCTC AATGGACAGAAGAGCTCATCTAAGCTTACTGGTGGATTGGAGGTTTTGCAGAACATGACGTCATTGAAAGAAGCTTGGCTTCATGACAATGCCTTCACTG GTCCTTTACCTGATTTCACCGGTTTGGTCAGCTTGGAGAGCTTGAGCTTGAGGGATAACGAATTGACCGGACCAGTTCCGGATTCCTTAACCGGCCTGGA TTCCTTGAGATTTGTTAACTTGACTAACAATCTGTTCCAAGGAGCTGTGCCTCAGTTCAAGAGTGAGGTTAAAGTGGACATGGTGAAGGACTCTAATAGC TTCTGCTTGTCGGGACCGGGAGAATGCGATTCGAGGGTGGAAGCTTTGATTTCGGTAGCGAAATCGCTGGGATACCCTCGGAGGTTCGCTGATAACTGGA AGGGGAACGATCCGTGTTCGAATTGGGTAGGGATATCTTGTAGCAGTGGGAATAACATCACTGCTGTGAACTTCCAGAAGATGGGTCTTTCGGGGACTAT ATCTCCTGATTTGGGTTCGCTTACTTCTGTGCAAAGGTTGCTTCTTTCTGACAATAACTTGACTGGCACGTTACCTAAGGAGCTTGCTTCGTTGCCGAAT CTTAAAGAGGTTGATGTGTCGAATAATCAGATTTCGGGGGATGTTCCGGGGTTTAAAGATGGGATCGATGTTAAGACGGCTGGGAACAAGGATATAGGTA AGGACATTAGTGTACTACCTCCGGATGCTGTCAGGCTGCTGCTGGCTCGTCGAGTCAGGTACCGGATGGAAGTACTGGTACCGGAAATGGCACTGAAGCA GAAGTTGAAGTTTACTAGAGTTCAGAGCCCCAATGCTACTATGGTGATCCATCCTCGCCATTCCGGGTCCGATAACGAGAGTGTAGGCAAAATCACCACG GCAGCTACTGCTGGATCGGTAGTAGGAACACTTAGCGAAACTAGGACGACAATGGCAATGAGCGAGCTAGGAGGAGGGAGTGGAGATCATCAGATTCAGA TGGTTGAAGGTGGTGGTGGTGGTAGCAACAGCATGGTCATTTCAATCCAGGTGCTAAGGAACGTTACGGATAATTTCAGCGAGAAGAACATATTAGGTCA AGGAGGGTTCGGAGTGGTGTACAAAGGCGAGCTCCACGATGGCACGAAGATCGCGGTGAAGAGGATGGAGTCCTGTGTGATGAAGAGCAAAGGGGATTCC GAGTTCATGTCTGAGATATCTGTTCTGACTAAAGTGAGGCATCGACACCTTGTCGGGTTACTTGGATACTGTCTGGATGGACATGAGAAGCTTCTTGTTT ACGAGTATATGCCGCAGGGGACACTTAGTAGCCATCTTTTCAACTGGGAGGGAGAAGGGTTGAAGCCGTTGGATTGGACGAGGAGACTGACTATAGCATT GGATGTTGCTAGGGGTGTTGAGTATCTTCATGGCTTGGCACATCAGAGCTTCATACATAGGGACTTGAAGCCTTCCAACATTCTTCTTGGGGATGATATG AGGGCCAAAGTTGCTGATTTCGGCCTTGTTCGTCTTGCTCCCGAGGGGAAAGGGTCCATTGAGACTAGGATTGCAGGAACATTCGGGTACTTGGCTCCGG AATACGCTGGGTTCATCGAGTCGACGATCCATGATCTATCTGAACATGTTGTTTTGTCAATGTTGATTGCAGTTACAGGAAGAGTGACAACCAAAGTTGA CGTCTTCAGCTTCGGAGTGATACTAATGGAGCTCATAACCGGTCGAAGAGCCCTAGACGAGACCCAACCAGAAGAGAGCATGCACCTAGTAACATGGTTC AAGAGAATGTCCCTCAACAAGGAACAGTTCCGGAAGCAAGCTATCGACCCCACCATCGACCAAACCAACGAGGAAACCCTAGCGAGTGTGACCACAGTGG CCGAATTTGCAGGCCACTGCTGCGCAAGGGAGCCATACCAAAGACCAGACATGGGCCATGCAGTCAACTTGCTGTCTTCCCTCGTCGAGCTATGGAAACC GAGCGACCAAACCCCCGAGGACATGTACGGGATCGACCTCGACATGTCGCTGCCGCAGGCATTGCAGAGATGGCAAGCCTATGAAGGCAGGAGCAACCTC GAGTCATCCTCCTCTTCTTTACTCGTTCCTAGCAGCTTAGACAACACTCAGGCTAGCATCCCTCCAAGGCCGTACAGGTCCTCGGAATCATACTCGTGGC TAATGCGTGGCGACGATCGACATGGCTAA
AA sequence Show only first row Show all	>Lus10010472 pacid=23154091 polypeptide=Lus10010472 locus=Lus10010472.g ID=Lus10010472.BGIv1.0 annot-version=v1.0 MISSNQFDSIPPDFFHGMSSLQSVEMDNNPLSPWEFPESLRNASSLQKFSANSVNLTGSIPDFFGSDVFPGLVTLHLAINGLEGTLPASFGRSDIQSLWL NGQKSSSKLTGGLEVLQNMTSLKEAWLHDNAFTGPLPDFTGLVSLESLSLRDNELTGPVPDSLTGLDSLRFVNLTNNLFQGAVPQFKSEVKVDMVKDSNS FCLSGPGECDSRVEALISVAKSLGYPRRFADNWKGNDPCSNWVGISCSSGNNITAVNFQKMGLSGTISPDLGSLTSVQRLLLSDNNLTGTLPKELASLPN LKEVDVSNNQISGDVPGFKDGIDVKTAGNKDIGKDISVLPPDAVRLLLARRVRYRMEVLVPEMALKQKLKFTRVQSPNATMVIHPRHSGSDNESVGKITT AATAGSVVGTLSETRTTMAMSELGGGSGDHQIQMVEGGGGGSNSMVISIQVLRNVTDNFSEKNILGQGGFGVVYKGELHDGTKIAVKRMESCVMKSKGDS EFMSEISVLTKVRHRHLVGLLGYCLDGHEKLLVYEYMPQGTLSSHLFNWEGEGLKPLDWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDM RAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAGFIESTIHDLSEHVVLSMLIAVTGRVTTKVDVFSFGVILMELITGRRALDETQPEESMHLVTWF KRMSLNKEQFRKQAIDPTIDQTNEETLASVTTVAEFAGHCCAREPYQRPDMGHAVNLLSSLVELWKPSDQTPEDMYGIDLDMSLPQALQRWQAYEGRSNL ESSSSSLLVPSSLDNTQASIPPRPYRSSESYSWLMRGDDRHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	1.0	0.9251
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	1.4	0.8973
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	2.8	0.8578
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	3.5	0.8644
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	6.3	0.8557
AT3G07210			unknown protein		Lus10038194 [exp]	7.9	0.8462
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	11.0	0.8546
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10024248 [exp]	13.4	0.8219
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	13.9	0.8485
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	14.2	0.8530

Compare expression of checked genes

Lus10010472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.