Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22150 969 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 393 / 3e-123 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 381 / 2e-118 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 368 / 7e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 358 / 4e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 356 / 6e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 364 / 8e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 350 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 355 / 6e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 349 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003806 [exp] 1593 / 0 AT3G22150 997 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016943 [exp] 405 / 9e-128 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 405 / 6e-127 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 400 / 7e-126 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 401 / 2e-125 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 390 / 6e-122 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 388 / 3e-121 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 378 / 2e-117 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10032091 [exp] 369 / 8e-115 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G007800 [exp] 1095 / 0 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 404 / 9e-127 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 402 / 9e-126 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 391 / 1e-122 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G134300 [exp] 389 / 9e-122 AT5G08490 977 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 388 / 6e-120 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 378 / 3e-118 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 379 / 6e-118 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 375 / 2e-116 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 374 / 1e-114 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010473 pacid=23154076 polypeptide=Lus10010473 locus=Lus10010473.g ID=Lus10010473.BGIv1.0 annot-version=v1.0 ATGGGCTTCGCTGCACTCCTTCGCTCGCCACTACCGTCATTTCCCTTCCTTCCTCGCACCAGTGTCGCCGTCGTCGTGATTCTGGCCAGGAACGTCCACG TCGAAGCTCCGTCGCCGGCCATTGCTCTTACAATGGCTTCGGCTTCCTCCTCATTCGTCGCCCTTCCTGCCCCTATCTCCGTCCATTCTCGCCGCAGCTC CGATGCCGACGAGGGTAAATTCTCCATATTAACAGTCTCCACATCTCCGAACCCAACTCTCAAGACACCCACAATCCGCTCTCGCCTCAGCAAGCTCTGC CAAGATGGTCAACTGCAACTTGCCCGTCAACTGTTCGATACAATTCCTCAACCGACGACTTCGGTTTGGAACACGATCATTATCGGGTACATTTGCAATG ACATGCCGTATGAAGCCCTTCATTTATACGGACATATGAAGAGAAGTGGGTTTCCTAATACCAAGTGTGATTCTTACACTTACTCTTCTACGTTGAAAGC CTGTGCCCAGACGGCGGATTTAAGGGCTGGTAAGGCCGTTCATTGCCATTTGATTCGCTGCGTTGAGTATCCGAGTAAGATTGTGAATAATTCGCTGCTG AACATGTACTCCACTTGCTTAAGCCAACTGAATTCGTCTATTCGAGTTGAATTTTCCAAGTATGATGTTGTCCGCAAGGTGTTTGATACAATGCGCAAGA GAGATGTTGTAGCCTGGAACATTTTGGTTTCGTGGTATGTTAAGACGGATAGGTTCGCTAGAGCTGTTAGGCAGTTTAGGAGGATGATGAAAATGGAGAT TAAACCGAGTCCGGTGAGCTTCGTCAGTGTTCTCCCTGCTGTATCGGCTATCCAGGACAGTGTAGCTGCGAATGCGCTGTATGGGATGCTTGTTAAGCTC GGTGGTGAGTATATCAACGACTTGTTTGTTGTGAGTTCAGCCATTATTATGTACTCAGAGCTTGGCTGTCTTGATTTGGCCAGGAAGGTCTTTGACTGCT GTTTGGTGAAGAACACTGAAGTCTGGAATAGCATGATTGGTGGGTATGTGCAGAACAATCGTCCGGTCCAAGCGGTCGATCTTTTCCTTCGTGCAATCGA AAATAAACAGACCGATAGCATATCGTACCTTTCGGTCTTGACAGCTGTTTCGCAGCTGCAGTGTTTAGATTCAGCTCGACAGCTGCACGCCTTTGTCGTC AAGAATCTCGGTCCAGTACCACCCGTGGTGATACAGAATGCAGTCATAGTCATGTATTCACGGTGCAACGCTGTCGAAACTTCGTTCGATGTCTTCCAGA ATATGCCTGAACGAGACGTGGTCTCATGGAACACGATGGTTTCTGCATTCGTGCAGAATGGTTTCGACGACGAAGGGTTGATTCTCGTGCACGAAATGCA GAAGCAGAAGTTCGAAGTTGATGAGGTGACAGTCACTGCTCTGCTCTCTTTAGCATCTAATCTGAGAAACCTGCACATTGGGAAACAAACCCATGGATAC ATCCTCAGGCAAGGTGTAAAATTCGAAGGAATGGAGAGTTATCTAGTCGACATGTATGCGAAATGTGGCTCGAATTCGATCAGTACTGCTGAGCACATTT TCTGGACGAGCCTTTCGAGAAGTAGAGATCAAGCGACGTGGAACGGTATGATTTCCGGGTACACACAGAATGGGTTGGTTGAAGAAGCTTTTGCAACATT CAGGCAAATGCTTCAGCTACCAGTGGTGCCTAATGCTGTAACGTTAGCATCTATCCTTCCAGCTTGTACTCAAATGGGAAGCATCAATCTCGGGAAGCAA CTCCACGCTGTCTCTATCCGACATATGTTCGACCAAAATATCTTCCTAAGCTCAGCTTTAGTCGACATGTACTCTAAATCAGGCTCGATCAGCTATGCTG AATCCGTGTTCTTCGCCAGATGTCCCGACAGAAACTCGGTCACATACACGACGATGATCTTAGGCTATGGTCAGCATGGAATGGGCGACAAAGCCTTATC TTTGTTCCACTCCATGCAAAGCTCAGGTGTGAAACCTGATGCAGTGACGATAGTAGCACTTCTTTCCGCCTGTAGCTACTCGGGATTGGTCGAGGAAGGT CTTCAGGTATTTGAATCGATCGAGAAGGAGTTTGACATCGAACCTACGGTTCAGCATTACTGTTGCATAGCTGATATGCTGGGAAGAGTGGGCAGAGTGG TGGAGGCTTACGAATTTGTCGAACGATTGGGCGAAAGGGGCAATGTTGTGCAAATTTGGGGATCGGTTCTCGGGGCGTGTAGACTTCATGGATGTAACGA GATAGGAGAAGCTGTTTCGGAGAAGATACGAGCGCTAGGAGGTGGGGTGGAAGGCTATGAGGTGCTGCTCTCGAATATTTATGCTGGAGAAGGTGACTGG AAAAGTGTTGACAAAATGAGGAGAGGGATGAGGGAAAAGGGTTTGCAGAAGCTTGTTGGTCGTAGCTGGATTAACATCGGAGGTAACGTGACTCATTTCG TGTCGAGAGATCAAGACCACGATCAATGTGATCGGATTTACGGAGCGTTGGAAGGTCTTTCCATGGAGATGAAGCATTCTGATGTCTGA
AA sequence Show only first row Show all	>Lus10010473 pacid=23154076 polypeptide=Lus10010473 locus=Lus10010473.g ID=Lus10010473.BGIv1.0 annot-version=v1.0 MGFAALLRSPLPSFPFLPRTSVAVVVILARNVHVEAPSPAIALTMASASSSFVALPAPISVHSRRSSDADEGKFSILTVSTSPNPTLKTPTIRSRLSKLC QDGQLQLARQLFDTIPQPTTSVWNTIIIGYICNDMPYEALHLYGHMKRSGFPNTKCDSYTYSSTLKACAQTADLRAGKAVHCHLIRCVEYPSKIVNNSLL NMYSTCLSQLNSSIRVEFSKYDVVRKVFDTMRKRDVVAWNILVSWYVKTDRFARAVRQFRRMMKMEIKPSPVSFVSVLPAVSAIQDSVAANALYGMLVKL GGEYINDLFVVSSAIIMYSELGCLDLARKVFDCCLVKNTEVWNSMIGGYVQNNRPVQAVDLFLRAIENKQTDSISYLSVLTAVSQLQCLDSARQLHAFVV KNLGPVPPVVIQNAVIVMYSRCNAVETSFDVFQNMPERDVVSWNTMVSAFVQNGFDDEGLILVHEMQKQKFEVDEVTVTALLSLASNLRNLHIGKQTHGY ILRQGVKFEGMESYLVDMYAKCGSNSISTAEHIFWTSLSRSRDQATWNGMISGYTQNGLVEEAFATFRQMLQLPVVPNAVTLASILPACTQMGSINLGKQ LHAVSIRHMFDQNIFLSSALVDMYSKSGSISYAESVFFARCPDRNSVTYTTMILGYGQHGMGDKALSLFHSMQSSGVKPDAVTIVALLSACSYSGLVEEG LQVFESIEKEFDIEPTVQHYCCIADMLGRVGRVVEAYEFVERLGERGNVVQIWGSVLGACRLHGCNEIGEAVSEKIRALGGGVEGYEVLLSNIYAGEGDW KSVDKMRRGMREKGLQKLVGRSWINIGGNVTHFVSRDQDHDQCDRIYGALEGLSMEMKHSDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	1.7	0.9237
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	2.8	0.9121
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10028683 [exp]	3.0	0.9125
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	5.5	0.9149
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	8.1	0.9081
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	8.5	0.8985
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	9.2	0.9091
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	10.2	0.8937
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	10.6	0.9078
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	11.6	0.8597

Compare expression of checked genes

Lus10010473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.