Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29730 132 / 4e-36 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT1G07250 130 / 1e-35 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT1G07260 130 / 2e-35 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT2G29710 129 / 2e-35 UDP-Glycosyltransferase superfamily protein (.1) AT1G07240 126 / 5e-34 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT3G21800 124 / 4e-33 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 123 / 7e-33 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT2G29750 119 / 2e-31 UGT71C1 UDP-glucosyl transferase 71C1 (.1) AT2G29740 118 / 4e-31 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT4G15260 116 / 7e-31 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003805 [exp] 272 / 1e-89 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 256 / 1e-83 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 142 / 6e-40 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10027334 [exp] 129 / 3e-37 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1) Lus10026793 [exp] 130 / 2e-35 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10026795 [exp] 124 / 5e-33 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 121 / 4e-32 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 120 / 1e-31 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 115 / 1e-29 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015700 [exp] 139 / 1e-38 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 130 / 2e-35 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G014500 [exp] 127 / 2e-34 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.016G016900 [exp] 127 / 2e-34 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1) Potri.016G016300 [exp] 127 / 3e-34 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G044600 [exp] 126 / 5e-34 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1) Potri.016G016200 [exp] 125 / 9e-34 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1) Potri.006G007300 [exp] 125 / 1e-33 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 125 / 1e-33 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014350 [exp] 125 / 1e-33 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010475 pacid=23154062 polypeptide=Lus10010475 locus=Lus10010475.g ID=Lus10010475.BGIv1.0 annot-version=v1.0 ATGACTAAACCAGAGTTAGTAATGGTCCCAGTTCCGGCGGCCGGCCATATCCCGCCGGCGGTCGAATTCTCCAAGCGACTCACAGCTCGCAACAGTCAAC TCTCCATCACAATCGTACAGTCTCGAGCGATTAATATCTTTAACGGAAAATTTGACGGAGTTCGTCGGATTAATGGAGGGAAGTCATTTCCTCATGTTTT TCCGGTCGGACCGGTCGTCAATCTGAAAAGGTATGCCACATTCGGAAACACCAACTCGTTGAGTACCAAAAAAGCGATGACGTGGCTAAACGACCAGCCT CCACAGTCGGTCGTGTTCATTTGCTTAGGAAGTCTAGGAAGATTGAGAGACACCCAACTAGGGGAAGTTGTGGCGGGGCTAGAGCGAGTCCTGTACGTGC ATTTTTTGTGGGTTGTCCACAAGATGTCGTCCGGGGAAGACAAATCTATGCCTTACGACTGTGAGGACTACTCTCCATCTTCGTTTGCTCTCAACGTTTT GGGTGAAGGGTTTTTCGAACGGACGAGAGGGAGAGTAATGGTGTGTGGGTGGGTCCCTCAGGTTGCTATATTGGCCCACAAGGCCATTGGAAGGTTCATG TCGCATTGTGGGTGGAACTCAATACTCGAGAGCGTCTGA
AA sequence Show only first row Show all	>Lus10010475 pacid=23154062 polypeptide=Lus10010475 locus=Lus10010475.g ID=Lus10010475.BGIv1.0 annot-version=v1.0 MTKPELVMVPVPAAGHIPPAVEFSKRLTARNSQLSITIVQSRAINIFNGKFDGVRRINGGKSFPHVFPVGPVVNLKRYATFGNTNSLSTKKAMTWLNDQP PQSVVFICLGSLGRLRDTQLGEVVAGLERVLYVHFLWVVHKMSSGEDKSMPYDCEDYSPSSFALNVLGEGFFERTRGRVMVCGWVPQVAILAHKAIGRFM SHCGWNSILESV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010475 [exp]	0	1
					Lus10012045 [exp]	1.0	0.9423
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008979 [exp]	1.4	0.9152
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10024846 [exp]	6.2	0.7497
AT3G23550			MATE efflux family protein (.1...		Lus10012960 [exp]	17.7	0.7694
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	19.5	0.7367
AT5G36000			unknown protein		Lus10004013 [exp]	38.4	0.7614
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	40.9	0.7609
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	44.4	0.6877
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	47.0	0.7593
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	49.8	0.7591

Compare expression of checked genes

Lus10010475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.