Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07250 342 / 8e-113 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15280 336 / 1e-110 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07240 330 / 4e-108 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT2G29710 321 / 7e-105 UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 320 / 4e-104 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT3G21760 316 / 1e-102 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT1G07260 314 / 6e-102 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT2G29730 311 / 4e-101 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT3G21800 311 / 8e-101 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT3G21790 311 / 2e-100 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003805 [exp] 947 / 0 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 355 / 2e-117 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10036087 [exp] 340 / 6e-112 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 339 / 9e-112 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036086 [exp] 331 / 3e-108 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 320 / 8e-104 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 315 / 3e-102 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10010475 [exp] 257 / 3e-83 AT1G07250 131 / 5e-36 UDP-glucosyl transferase 71C4 (.1) Lus10039302 [exp] 253 / 4e-78 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015700 [exp] 399 / 4e-135 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014500 [exp] 391 / 8e-132 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.016G016000 [exp] 376 / 3e-126 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G015800 [exp] 370 / 7e-124 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.009G044600 [exp] 362 / 9e-121 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1) Potri.006G010000 [exp] 360 / 4e-120 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.014G026301 [exp] 358 / 4e-119 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1) Potri.016G014350 [exp] 352 / 8e-117 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016900 [exp] 348 / 2e-115 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1) Potri.016G014401 [exp] 348 / 4e-115 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010476 pacid=23154066 polypeptide=Lus10010476 locus=Lus10010476.g ID=Lus10010476.BGIv1.0 annot-version=v1.0 ATGATGACTAAACCAGAGCTAGTAATGGTCCCAATTCCGGCGATCGGCCATCTCCCGCCGGTGGTCGAATTCTCCAAGCGCATCACCGCTCGCAACAGTC AACTCTCCGTCACAATCGTACTCATCAGAACTCCCTTCTCTCCGGAGGTCGACTCGTTCTCCGACCGGCTAGCCGAATCCTGCAAAGACTGGAAAGCAAT CAATTTTATCAGAATCTCCGAACCCAAGTTCCCGCCCATCGATTCCTACAGTTCCGTACACACTTTCTTCCCGAAATTTCTGGATTCCCAGACGGAGGTT GTGAAACAGGCTCTGGCGGCTCGGTTCGTCAGCGATTCCTCTGTTACGTTAGCCGGGTTCGTGGTGGATATCCTGACGACGGCCATGGTTGATTTGGGGA AGGAGCTTGGTGTTCCTTCTTACCTTTTCTTCCCTTCTTGTGCGGCACTTCTGGGTCAGTTTGTTCATTTTCCGGCGATGGGGTACTCGCCAGAGGTGGC CGTCAGTGATCCCGACGGCGAGGTGGCTTACCCCAGCTTTGCGCATCCGGTGCCCAATCGGATCCTGCCGGCAATTATCCTCGACGGACAAGGCTACGAA GAGTTGATGGGTCACACGAGGAAGTACGAAGAGGTTGATGGAATCGTTGTAAATTCGTTCGTCGGGCTCGAGTCTCGAGCAATTAATATCTTGAACGAAA AAGTTGACGGAGTTCGTCGAATCGGAGGGAAGTCATTCCCTCCGGTTTTTCCAGTCGGACCGGTTCTCAATCTGAAAGGGCATGCCACGCTAGGAACAAC CAAATCGTCGAACGAAAAAGCGATGACGTGGCTGGACAACCAACCTCCACAATCGGTCGTGTTCATGTGCTTTGGAAGTCTGGGAAGCTTCACTGATGCC CAACTGGCAGAAGTCGCGGTCGCGCTCGAGCGAGCTCGAAACGTGCGCTTTCTGTGGGTAATGCGCAAGATATCATCCGGAGATACCAAATGGATACCTA ACGACTGCGAGGACTACTCACCCTCCTCGCCCGCTCTCAAAGCATTGGGAGAAGGGTTTCTCGAGCGGACGAGAGGGAGAGTAATGGTGTGCGGGTGGCT CCCTCAGGCCTCTATACTAGCCCACAAGGCCATTGGAGGGTTTATGTCACACTGCGGCTGGAACTCCATACTCGAGAGCCTCTGGCACGGGGTGCCCATA CTAGCATGGCCGATGTACGCAGAGCAGCAGATAAATGCATTCTACCTGGCAAAGGAGTTAGGATTGGCGGTCGAGCTAAGAGCGGACTACCGAATATGGA AAAGCGATGAGGATGGAGAAATGGTGGTGAAGGGAGAAGAGATTGCTAGGAAGATTGAGATGGTGATGGACAAGCATAGTGAGGTGAGGAAGAAGGTCAA GGAGATGAGTGAGCTTGGAAGGAGAGCTTTGAATGAAGGTGGATCTTCATTTGATGCCATGGGTGGCTTCATTGATTTGGTGTTGAAGAACAAGCCAATG GTTTAG
AA sequence Show only first row Show all	>Lus10010476 pacid=23154066 polypeptide=Lus10010476 locus=Lus10010476.g ID=Lus10010476.BGIv1.0 annot-version=v1.0 MMTKPELVMVPIPAIGHLPPVVEFSKRITARNSQLSVTIVLIRTPFSPEVDSFSDRLAESCKDWKAINFIRISEPKFPPIDSYSSVHTFFPKFLDSQTEV VKQALAARFVSDSSVTLAGFVVDILTTAMVDLGKELGVPSYLFFPSCAALLGQFVHFPAMGYSPEVAVSDPDGEVAYPSFAHPVPNRILPAIILDGQGYE ELMGHTRKYEEVDGIVVNSFVGLESRAINILNEKVDGVRRIGGKSFPPVFPVGPVLNLKGHATLGTTKSSNEKAMTWLDNQPPQSVVFMCFGSLGSFTDA QLAEVAVALERARNVRFLWVMRKISSGDTKWIPNDCEDYSPSSPALKALGEGFLERTRGRVMVCGWLPQASILAHKAIGGFMSHCGWNSILESLWHGVPI LAWPMYAEQQINAFYLAKELGLAVELRADYRIWKSDEDGEMVVKGEEIARKIEMVMDKHSEVRKKVKEMSELGRRALNEGGSSFDAMGGFIDLVLKNKPM V

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010476 [exp]	0	1
					Lus10016819 [exp]	8.1	0.8125
AT4G24380			unknown protein		Lus10020946 [exp]	11.1	0.7719
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	12.1	0.8657
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	14.8	0.8141
AT4G24380			unknown protein		Lus10000004 [exp]	17.7	0.7521
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	38.7	0.7891
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	39.7	0.8112
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10002083 [exp]	49.4	0.7357
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	55.9	0.7850
AT5G59190			subtilase family protein (.1)		Lus10004682 [exp]	58.0	0.7823

Compare expression of checked genes

Lus10010476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.